Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq633 145 9e-30 seq151 122 1e-22 seq564 98.7 1e-15 >seq633 Length=11014 Score = 145 bits (160), Expect = 9e-30 Identities = 463/713 (65%), Gaps = 19/713 (3%) Strand=Plus/Minus Query 104375 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 104434 |||||||| ||||||| ||||||||||| ||| | |||||||| | || || | |||| Sbjct 5786 TGCTTCCTGATCGCCATGAAGGAGGACTCCATCGAGGGTATCTACGACACCCTGAAGGAG 5727 Query 104435 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCC 104494 || ||| |||||||||| || || ||||| || || |||||| || | ||| | Sbjct 5726 TGCGCGTGCATCTCAAAGTCCGCCGGCGGTATCGGTCTGTCCATCCACGACATCCGAGGC 5667 Query 104495 AATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 104554 | || || || || ||||| || ||| | || || | || ||||| ||| Sbjct 5666 ACCGCGTCGTACATCCGCGGCACAAACGGCACCTCAAACGGCATCGTCCCCATGCTGCGC 5607 Query 104555 GTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCG---TCGAAAGGGATCTATC 104611 || || |||| ||| ||||| || || | |||| ||| | || ||||| | | Sbjct 5606 GTGTTCAACGACACCGCGCGGTACGTGGACCAAGGCGGGGGCAAGCGCAAGGGCGCGTTT 5547 Query 104612 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 104671 || |||| ||||| || |||||| || ||| | || | || || ||| | ||| Sbjct 5546 GCGATCTACCTTGAACCGTGGCACAGCGACATCTTCGACTGGCTCGATTTGAGGAAGAAC 5487 Query 104672 CAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCA--GATC 104729 || || | || || ||||| ||||| || |||| || || |||| ||| || | Sbjct 5486 CACGGCAAGGAAGAAGCGCGCGCGCGCGACCTTTTCTACGGCCTGTGGA--CCAACGACC 5429 Query 104730 TCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCAC 104789 | |||||| |||| || ||| | ||| | ||| | || | || || || || | Sbjct 5428 TGTTCATGCAGAGGGTGGAGTCAAACGGCGAATGGACGCTGATGTGCCCGAACGAGTGCC 5369 Query 104790 CTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAG 104849 | || ||| | ||| | |||||||| ||| |||| ||||| |||||| ||| Sbjct 5368 CCGGGCTCGCGGATTGCTGGGGTGAGGCGTTCGAAGAGAAGTACACGGCGTACGAAAAAG 5309 Query 104850 AAGGTCGGGCGACTGC-----GACGGTGCCAGCTGCCGAT-GTGTGGAAAGCTATTCTCA 104903 ||||| | || ||| | | || || | | | ||| || |||||| Sbjct 5308 -----CGGGCAAAGGCAAGAAGACCAT-CAAGGCGCAGCTCCTTTGGTTTGCGATTCTCG 5255 Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 | || ||| || || || | || |||||||| | ||||||||| || |||| || Sbjct 5254 AATCGCAAGTAGAAACCGGCAACCCCTACATGCTGTTCAAAGACGCGTGCAACCGCAAAT 5195 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023 || || |||| ||||| ||| | || || || || || || ||| | || | Sbjct 5194 CCAACCAGCAGAACCTGGGTACGATTCGGTCGTCGAACCTGTGCACGGAGATCATCGAGT 5135 Query 105024 TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCC 105076 | || | || || || || ||||| |||||||| || ||||| |||||| Sbjct 5134 TCACGTCCCCGGAGGAAACCGCGGTGTGCAACCTCGCGTCCATCGCGCTCCCC 5082 >seq151 Length=22738 Score = 122 bits (134), Expect = 1e-22 Identities = 199/284 (70%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||| || |||||||| || ||||| ||||| || ||||||||||| || || ||| | Sbjct 2086 TCAAACCCGTCCATCTCGGTTAAAAGCTGGTTGATGGTTTGTTCCCGCTCGTCGTTCCC- 2028 Query 9671 GGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 || ||| ||||| | ||||||| || || || || ||||| |||||||| |||| Sbjct 2027 -GCCGCCCATCCCAGCCCCGCGTTGCCGCCCAACCGCGTCGATCTCGTCAATGAACACGA 1969 Query 9729 TGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 9784 |||| || ||| |||| || ||| || | ||| || |||||| || || Sbjct 1968 TGCAAGGCGCCTTGGATTTC----GCCTTTTCGAACAAATCGCGAACACGCGACGCCCCG 1913 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 9844 || || || ||||||||||| || | | ||||| ||| || || || || | | Sbjct 1912 ACCCCGACGAACATCTCCACGAACTCGGAGGCGGCGCATGAGAAAAACGGCACGCCCGCT 1853 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || ||||| | |||| |||||| | |||||| || || || || Sbjct 1852 TCGCCCGCCACGGCTTTGGCGAGCAAAGTCTTGCCGGTCCCCGG 1809 >seq564 Length=17261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||||||| |||| || ||||| | |||||| | |||||||| || || Sbjct 9114 TCCTTCGCCGAGCGACTCATCGCGTTCGCGTGCATCGAGGGTGTTTTCTTCTCCGGGTCG 9173 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||| || || ||||| || ||||| || | ||||| || || || |||||| Sbjct 9174 TTCTGCAGCATCTACTGGCTGAAAAAGCGCGGGTTGATGCCCGGGCTGACGTTTTCCAAC 9233 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||||| ||| || ||||| || || |||| || || ||| Sbjct 9234 GAGCTCATCAGCCGCGACGAAGGGCTTCACCGTGATTTCGCG 9275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253006177560