Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq633 259 5e-64 seq290 136 4e-27 >seq633 Length=11014 Score = 259 bits (286), Expect = 5e-64 Identities = 402/568 (71%), Gaps = 6/568 (1%) Strand=Plus/Minus Query 53276 ACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGC 53335 |||||||| |||| || ||||||||| |||||| | ||| ||| | ||| ||| Sbjct 5843 ACGCACGCGTCGCCCACGCTGTTCAACAGCGGTACGCCCCGCCCGCAGCTCTCGTCGTGC 5784 Query 53336 TTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGT 53395 |||||| | || |||||||| ||||| ||||| || |||||||| || || |||||||| Sbjct 5783 TTCCTGATCGCCATGAAGGAGGACTCCATCGAGGGTATCTACGACACCCTGAAGGAGTGC 5724 Query 53396 GCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT--CCACTGCTCGAACGTCCGTGCGA 53453 || |||||| |||| | || ||||||||| | ||| | | ||| | |||| | | Sbjct 5723 GCGTGCATCTCAAAGTCCGCCGGCGGTATCGGTCTGTCCA-TCCACGA-CATCCGAGGCA 5666 Query 53454 ACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCG 53513 || | ||| || || |||||| | | | || ||||| || ||||| |||| Sbjct 5665 CCGCGTCGTACATCCGCGGCACAAACGGCACCTCAAACGGCATCGTCCCCATGCTGCGCG 5606 Query 53514 TCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCG 53573 | |||||| |||| || |||||||| |||| || || || ||||||||||| |||| | Sbjct 5605 TGTTCAACGACACCGCGCGGTACGTGGACCAAGGCGGGGGCAAGCGCAAGGGCGCGTTTG 5546 Query 53574 CCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATC 53633 | |||||||| || ||||||||| |||||| | || | ||||| || | ||| | Sbjct 5545 CGATCTACCTTGAACCGTGGCACAGCGACATCTTCGACTGGCTCGATTTGAGGAAGAACC 5486 Query 53634 AGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTC 53692 | || | ||||| |||| || ||||| || ||| || ||||||| ||||| Sbjct 5485 ACGGCAAGGAAGAAGCGCGCGCGCGCGACCTTTTCTACGGC-CTGTGGACCAACGACCTG 5427 Query 53693 TTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCC 53752 |||||||| | ||||||| ||| || ||| |||||||||||||||||||||||| Sbjct 5426 TTCATGCAGAGGGTGGAGTCAAACGGCGAATGGACGCTGATGTGCCCGAACGAGTGCCCC 5367 Query 53753 GGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAG 53812 || ||| || | || ||||||| ||| | |||| ||| | |||||| | | Sbjct 5366 GGGCTCGCGGATTGCTGGGGTGAGGCGTTCGAAGAGAAGTACACGGCGTACGAAAAAGCG 5307 Query 53813 GGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 ||| |||||||| ||||||||| Sbjct 5306 GGCAAAGGCAAGAAGACCATCAAGGCGC 5279 Score = 125 bits (138), Expect = 8e-24 Identities = 561/870 (64%), Gaps = 48/870 (6%) Strand=Plus/Minus Query 55094 TTTGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTC 55153 |||||| | |||||| ||| | ||||| || || || ||||||||| || || Sbjct 4991 TTTGACCACGCCAAGCTCGCCGAGATCACGCGCAAGGTAACGCGCAACCTGAACAGGATC 4932 Query 55154 ATCGACAAGAATTACTACCCGACTGAAG-CGGCGCGCAAGTCCAACCTCCGGCACCGGCC 55212 |||||| ||| |||||||| | || || | ||||| || ||| | |||||||| || Sbjct 4931 ATCGACGTGAACTACTACCC-AGTGGAGACCGCGCGGCGTTCGAACATGCGGCACCGCCC 4873 Query 55213 CATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGA 55272 ||||| | |||| || |||||| | || || | ||||| ||||||| || ||||||| Sbjct 4872 CATCGGCCTCGGCGTCCAGGGCCTCGCGGATGTGTTCATCCTGCTCGGCCTGGCCTTCGA 4813 Query 55273 CTCG---GAACCTGCTCGAGAAATT-AACCAGGACATCTTC-AGTCGCATCTACTTTGCA 55327 || ||| | || ||||| | ||| ||| || ||| | || |||||||| || Sbjct 4812 TTCCCCCGAAGC-GC---AGAAACTCAACGCGGAGATTTTCGAAACG-ATCTACTTCGCC 4758 Query 55328 GCGCTCGAGGAGTCGT--GTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTG 55385 ||||| ||| || | ||| || || || ||||| ||||| |||| | | Sbjct 4757 GCGCTGACGGAATCCAACGCCATA--GCGGTGGTGGACGGGACGTACGAAACGTACGCCG 4700 Query 55386 ATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTC----TGA--CC 55439 ||||| | | |||||| | || ||| || | |||||| ||| ||| || Sbjct 4699 GGTCGCCTGTTTCCAAGGGCATCCTGCAGCCTGAAATGTGGGGC--GTCACGGTGATGCC 4642 Query 55440 C--------CATGTTTGACAAGTTGAAGCATGACATTCAC---TTGTGG-----GGCCTA 55483 | || | ||| | | | || | ||| | | || ||| | Sbjct 4641 CGGCGGGGACAGGCACGACTGGGTCGGTC-TG-CGCTCAAAGATCGCGGCGAGCGGCGTG 4584 Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| || |||||||| || ||||| |||||||||||| | || ||| |||||||| Sbjct 4583 CGGAACTCGCTTCTCGTGGCTCCCATGCCCACCGCGTCGACGTCGCAAATCCTGGGCAAC 4524 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| ||||| || ||||| | |||||||||| | ||| || | || ||| Sbjct 4523 AACGAGTGCTTCGAACCCTACACCAGCAACATCTACGCCAGACGGGTGCTTTCCGGAGAG 4464 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | || | ||||| ||||| | ||| || | | | |||| |||| Sbjct 4463 TTCACCGTGGTGAACAACCACCTTCTTTCGGATTTGACGGAACTAGGGTTGTGGGACCCC 4404 Query 55664 CAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAGATTCCTCTG 55723 |||||| || | | ||| || ||| || ||||| || || | Sbjct 4403 TCACTCAAGAACGACCTCATCTCCAACAACGGCAGCGTGCAAGGCCTGGACATCCCCGAG 4344 Query 55724 CGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT---GAC 55780 ||||||| ||||||| || |||||||| || || || || | || || ||| Sbjct 4343 GAACTCAAGGCGATTTACAAAACCGTGTGGGAAAT--CA-AGCAGCGCGTGCTTGTGGAC 4287 Query 55781 ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAG 55840 ||| || || || || |||| ||||||||| |||||| | ||| | |||| | Sbjct 4286 ATGGCCGCCGACCGAGGCGCGTTCATCGACCAAAGCCAGTCCTTCAACGTGCACATGTCG 4227 Query 55841 AATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAG 55900 | | || ||| | | || ||||||| |||| ||||||||||| || ||| Sbjct 4226 GACGCGAACGCGGGGAAGCTCACGTCCCTGCACTTCTACGCCTGGAAGAAGGGGCTGAAG 4167 Query 55901 ACGGGTATGTACTATCTGCGGACCCGCGCC 55930 ||||| |||||||| ||||| | |||||| Sbjct 4166 ACGGGGATGTACTACCTGCGCTCGCGCGCC 4137 >seq290 Length=36984 Score = 136 bits (150), Expect = 4e-27 Identities = 212/298 (71%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 152014 ATAGGACTCAAACGCGTGAAGATGTATCG-GGAGCTGGCCGCATCCTTGCCACCTGCCAG 152072 ||||| |||||||||||||||||| || |||| | | |||||||| ||| ||| Sbjct 6212 ATAGGCGCCAAACGCGTGAAGATGTAACGCGGAGACGCGTGG-TCCTTGCCGCCTTGCAG 6154 Query 152073 CCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATT 152132 || ||| || ||||| || || ||| | | ||||| | ||||||| |||||||||| Sbjct 6153 CCTCGTGCCGAACTGCCCGGAAGGCACCAAAAGGTTCACGTTGTTGCTCCCCACGAAATC 6094 Query 152133 CTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTG 152192 ||| |||| ||| |||||| | || |||||| |||||||| ||||| | || Sbjct 6093 CTGCGCCAGCCCCACGATCGTGGACGCAAGGGACGCTTCGCCGTGGTGGTACGCGGAGTG 6034 Query 152193 CTCCGCGATGTATCCCGCCAA-CTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGA 152251 ||| || ||| ||||| | |||||| || || ||||| |||| || ||||| Sbjct 6033 CTCGCTGACGTA-CCCGCTGAGCTGCGCGACTTTGATGTCTTGTTTCAGCTTGCGCTTGA 5975 Query 152252 GACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAAT 152309 || | | | | ||| |||||||| || || || || |||||||||||| ||||| Sbjct 5974 AGCACGAGAACAGCACTTTGCGCTGCGACGGCTTGAACCCGTCCACCACGGACGGAAT 5917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208687826200