Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq633 168 8e-37 seq520 145 9e-30 seq247 136 5e-27 seq290 114 1e-20 seq648 109 6e-19 seq443 93.3 5e-14 seq19 91.5 2e-13 >seq633 Length=11014 Score = 168 bits (186), Expect = 8e-37 Identities = 486/747 (65%), Gaps = 3/747 (0%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 |||||| || |||||||| || || || | || ||||||| ||| |||||||| Sbjct 5094 GGACGCGAGGTTGCACACCGCGGTTTCCTCCGGGGACGTGAACTCGATGATCTCCGTGCA 5153 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 || || || ||| ||| ||||||||||| | |||||| || ||| |||||| ||||| Sbjct 5154 CAGGTTCGACGACCGAATCGTACCCAGGTTCTGCTGGTTGGATTTGCGGTTGCACGCGTC 5213 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 ||| | |||||| ||| | ||||| || || || || | ||| || || ||||| Sbjct 5214 TTTGAACAGCATGTAGGGGTTGCCGGTTTCTACTTGCGATTCGAGAATCGCAAACCAAAG 5273 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146 ||||||||| ||| | |||||| | | ||| | ||| || Sbjct 5274 GAGCTGCGCCTTGATGGTCTTCTTGCCTTTGCCCGCTTTTTCGTACGCCGTGTACTTCTC 5333 Query 81147 GTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTG 81206 |||||| |||| || | ||| | ||||||||||| ||||||||||| Sbjct 5334 TTCGAACGCCTCACCCCAGCAATCCGCGAGCCCGGGGCACTCGTTCGGGCACATCAGCGT 5393 Query 81207 CCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAA 81266 ||| ||| || ||| || || |||||| ||| | |||| ||| || ||| Sbjct 5394 CCATTCGCCGTTTGACTCCACCCTCTGCATGAACAGGTCGTTGGTCCACAGGCCGTAGAA 5453 Query 81267 CAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCAT 81326 |||||||| |||||| || || | || ||||| | ||| ||||| |||| | Sbjct 5454 AAGGTCGCGCGCGCGCGCTTCTTCCTTGCCGTGGTTCTTCCTCAAATCGAGCCAGTCGAA 5513 Query 81327 GATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACC 81383 |||||| ||||| || || || || | || | || |||||||| | || || Sbjct 5514 GATGTCGCTGTGCCACGGTTCAAGGTAGATCGCAAACGCGCCCTTGCGCTTGCCCCCGCC 5573 Query 81384 CTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGA 81443 |||| ||||| || || || |||| || || |||| ||| |||| ||| || | ||| Sbjct 5574 TTGGTCCACGTACCGCGCGGTGTCGTTGAACACGCGCAGCATGGGGACGATGCCGTTTGA 5633 Query 81444 CTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACC 81503 ||||| || || ||| |||| | || | || | | | ||| || ||||| Sbjct 5634 GGTGCCGTTTGTGCCGCGGATGTACGACGCGGTGCCTCGGATGTCGTGGATGGACAGACC 5693 Query 81504 GATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTC 81563 ||| || || | ||||||| || || ||| |||| ||| || || || ||||| Sbjct 5694 GATACCGCCGGCGGACTTTGAGATGCACGCGCACTCCTTCAGGGTGTCGTAGATACCCTC 5753 Query 81564 GATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCC 81623 |||| || | |||||| | | || ||| || || | ||| |||| | || Sbjct 5754 GATGGAGTCCTCCTTCATGGCGATCAGGAAGCACGACGAGAGCTGCGGGCGGGGCGTACC 5813 Query 81624 GGCATTGAACAGTGTTGGGGTCGCGTG 81650 | |||||||| || || | |||||| Sbjct 5814 GCTGTTGAACAGCGTGGGCGACGCGTG 5840 Score = 98.7 bits (108), Expect = 1e-15 Identities = 526/832 (63%), Gaps = 40/832 (5%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 || |||| ||||| |||||||| |||||||| || |||||||||||| |||| | |||| Sbjct 4138 GCGCGCGAGCGCAGGTAGTACATCCCCGTCTTCAGCCCCTTCTTCCAGGCGTAGAAGTGC 4197 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 | || |||||||| | | | || | |||| | ||| | ||||| || Sbjct 4198 AGGGACGTGAGCTTCCCCGCGTTCGCGTCCGACATGTGCACGTTGAAGGACTGGCTTTGG 4257 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||| || || || || || ||||| || | || || |||||||| Sbjct 4258 TCGATGAACGCGCCTCGGTCGGCGGCCATGTCCACAAGCACGCGCTGCTTGATTTCCCAC 4317 Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCA 80268 || || || | |||| || ||||| || |||||||| |||||| ||||| Sbjct 4318 ACGGTTTTGTAAATCGCCTTG---AGTTCCTCGGGGATGTCCAGGCCTTGCACGCTGCC- 4373 Query 80269 CCGTCCTTTACAATTTGATTTTTCA--ATTCAGACGTCC-AGACACCAAGCTTGTGCAGA 80325 || || || | | ||| | | || |||| | | || || | || | Sbjct 4374 --GTTGTTGGAGATGAGGTCGTTCTTGAGTGAGGGGTCCCACAACCCTAGTTCCGTCAAA 4431 Query 80326 TCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGG----GTGCGACGCAG 80381 || | |||||| ||||| | || | |||||||| | || || | || || Sbjct 4432 TCCGAAAGAAGGTGGTTGTTCACCACGGTGAACTCTCCGGAAAGCACCCGTCTGGCGTAG 4491 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || ||| | ||||| || || || ||||||||| || ||||| || | ||| Sbjct 4492 AT----GTTGCTGGTGTAGGGTTCGAAGCACTCGTTGTTGCCCAGGATTTGCGACGTCGA 4547 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 ||| || ||||| || | || | || || ||||||| |||| | | ||| | Sbjct 4548 CGCGGTGGGCATGGGAGCCACGAGAAGCGAGTTCCGCACGCCGCTCGCCGCGATCTTTGA 4607 Query 80502 GCGCAAATCTGACCAAAAA-------TCAACCCC----AACGCTGTGAC--CCCACATGT 80548 ||||| | | |||| | || | || | | | ||||| ||||||| | Sbjct 4608 GCGCAGACC-GACCCAGTCGTGCCTGTCCCCGCCGGGCATCACCGTGACGCCCCACATTT 4666 Query 80549 CGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCG 80608 | |||||| |||||||| || | || ||||| ||| |||| ||||||| || ||| Sbjct 4667 CAGGCTGCAGGATGCCCTTGGAAACAGGCGACCCGGCGTACGTTTCGTACGTCCCGTCCA 4726 Query 80609 TCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCT 80668 | || | | || ||| | || || ||| || || || || | || Sbjct 4727 CCACCGCTATGGCGTTGGATTCCGTCAGCGCGGCGAAGTAGATCGTTTCGAAAATCTCCG 4786 Query 80669 TGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAG 80728 ||| | |||| | ||| ||||| | || ||| | || |||||||| || | Sbjct 4787 CGTTGAGTTTCTGCGCTTCGGGGGAATCGAAGGCCAGGCCGAGCAGGATGAACACATCCG 4846 Query 80729 CCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT---CGGCCT 80785 | |||||||| ||||||| | |||| |||||||| ||| ||||||| ||| ||| || Sbjct 4847 CGAGGCCCTGGACGCCGAGGCCGATGGGGCGGTGCCGCATGTTCGAACGCCGCGCGGTCT 4906 Query 80786 CCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837 || | |||||| |||| ||||||| | |||||||||||| || || Sbjct 4907 CC---ACTGGGTAGTAGTTCACGTCGATGATCCTGTTCAGGTTGCGCGTTAC 4955 >seq520 Length=32656 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || || ||||| ||||| || | ||| | || | |||||| Sbjct 23769 ACGGGTAAGACCATCACCCTGGAGGTGGAGTCTTCGGACACCATCGACAACGTCAAGGCT 23710 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || ||||| || |||||||||||||| || || || || ||| Sbjct 23709 AAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCGGGCAAG 23650 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | || ||||| || || || || |||| ||||||||||| || || Sbjct 23649 CAGCTTGAGGACGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAATCCACCCTGCAC 23590 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| |||| ||||||||||| Sbjct 23589 CTCGTCCTGCGCCTTCGCGGTGG 23567 >seq247 Length=13427 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || || ||||| ||||| || | ||| | || ||||||| Sbjct 6053 ACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGACAACGTGAAGGCG 6112 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| |||||||||||||| || || || ||||||||||| || ||||| || || ||| Sbjct 6113 AAAATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGCCTCATTTTCGCGGGCAAG 6172 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| || || || || || || || |||| ||||||||||| ||||| Sbjct 6173 CAGCTTGAGGATGGCCGCACGCTCGCGGATTACAACATCCAGAAGGAATCCACGCTTCAC 6232 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | || || ||||| || Sbjct 6233 CTGGTGCTCCGCCTGCGCGGAGG 6255 >seq290 Length=36984 Score = 114 bits (126), Expect = 1e-20 Identities = 291/438 (66%), Gaps = 6/438 (1%) Strand=Plus/Plus Query 31968 CATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCT 32027 |||||| ||||| |||||| ||||||| || |||||||| ||| | | | | ||| | Sbjct 5916 CATTCCGTCCGTGGTGGACGGGTTCAAGCCGTCGCAGCGCAAAGTGCTGTTCTCGTGCTT 5975 Query 32028 CAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCA 32087 |||| || ||| ||||| || || |||||||| || ||||| ||||| Sbjct 5976 CAAGCGCAAGCTGAAACAAGACATCAAAGTCGCGCAGCTCAGCGGGTACGTCAGCGAGCA 6035 Query 32088 AACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAA 32147 | || || ||||||||||| ||||| || | ||| || || || || ||| | Sbjct 6036 CTCCGCGTACCACCACGGCGAAGCGTCCCTTGCGTCCACGATCGTGGGGCTGGCGCAGGA 6095 Query 32148 CTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCT 32207 || || || || ||| ||||| | | | ||| || || ||||| || || |||| Sbjct 6096 TTTCGTGGGGAGCAACAACGTGAACCTTTTGGTGCCTTCCGGGCAGTTCGGCACGAGGCT 6155 Query 32208 CGCCGGTGGCAAGGATGCTGCGAGCTCC-CGTTACATCTTCACCCGTCTCGCACC--TTC 32264 || |||||||| ||| |||| |||||||||||||| ||| | || || || Sbjct 6156 GCAAGGCGGCAAGGACCACGCG-TCTCCGCGTTACATCTTCACGCGTTTGGCGCCTATTT 6214 Query 32265 GACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGG 32324 | ||||| || ||| | || ||||| || || | | ||| | ||| || || Sbjct 6215 GCCGCGC--CATCTTCCCCGAGTGCGACGACGCTTTGTTGGATTACCTTGATGAGGATGG 6272 Query 32325 TCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGC 32384 ||| |||| || | | |||| || | | ||| || | ||||||||||| || Sbjct 6273 CCAGGTTATCGAACCCGAGCACTACCTCCCAATTATGCCGCTGTTGTTGGTGAACGGCGC 6332 Query 32385 AGAAGGCATCGGAACGGG 32402 ||||| ||||| ||||| Sbjct 6333 GGAAGGTATCGGCACGGG 6350 >seq648 Length=41169 Score = 109 bits (120), Expect = 6e-19 Identities = 164/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || |||||| | || |||||||| || || || ||||||||||| Sbjct 13343 AATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACCCTGGAGGTTGAGTCTTC 13402 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || ||||||| || || ||||||| ||| || | || || | ||| Sbjct 13403 GGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAGGGAAGGCTTACCCCCCG-CCA 13461 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || || | || | ||| ||||| || | || || | || ||||| || Sbjct 13462 CCAGCGTCTCATCTTCGTGGGCAGGCAGCTCGAAGACGTCCGCACGTTGGCGGACTACAA 13521 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT-CTTGCGTCTTCGCGGTGG 27632 |||| | ||||||||| || | || || ||| | || |||||||| Sbjct 13522 CATCCAGATGGAATCCACGCTCGACCTGGTGCTTTC-CCTCCGCGGTGG 13569 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 || ||||| || ||||| | || |||||||| || || || ||||||||||| || Sbjct 13589 CAGATCTTCGTGAAGACTCCGACTGGCAAGACCATCACCCTGGAGGTTGAGTCTTCGGAC 13648 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 | ||| || || ||||||| || |||||||||||||| || || || || ||||||||| Sbjct 13649 ACCATCGCCAACGTGAAGGCGAATATTCAGGACAAGGAAGGCATCCCCCCCGACCAGCAG 13708 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 ||| | | || | || | ||||| || | || || | || ||||| | || Sbjct 13709 CGTATCTTATTCACGGGCATTATTCTCGAAGACGGCCGCACAATGGCGGACTACGACATC 13768 Query 27589 CAAAAGGAATCCACTCTTCATCTAGT 27614 | | ||||||||| || || || || Sbjct 13769 CGGATGGAATCCACGCTCCACCTGGT 13794 >seq443 Length=7289 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| || ||||||||||| |||||||||| | | | || ||||||| ||| | || Sbjct 5999 ATTCAAGATAAGGAGGGAATACCTCCAGACCTGGGGAGGCTCATTTTTGTTGGAAGGCTG 5940 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 | || || ||||||||||| ||||| || ||| | ||| |||| || | | ||||| Sbjct 5939 ATGGAAGAAGATCGTACCCTCGCAGAGTACAATATACAAGAGGAGAGCATTTTGCATCTC 5880 Query 27613 GTCTTGCGTCTTCGCGGTGGA 27633 | ||||| || || |||||| Sbjct 5879 ATTTTGCGGCTCCGGGGTGGA 5859 >seq19 Length=40506 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 |||| |||| || || || || ||||| || ||||| || ||| ||||| | | Sbjct 29803 AGCGCCTCGTCGCGTTCGCGTGCGTGGAGGGGATTTTTTTCAGCGGGAGCTTCTGCGCGA 29744 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 |||||||||| ||||| || ||||| ||| ||| ||| ||||||| |||||||||||| Sbjct 29743 TTTTCTGGCTCAAAAAACGAGGCCTCATGAAAGGCCTGACGTTTTCAAACGAGCTGATCA 29684 Query 64835 CTCGGGACGAGGG 64847 || |||||||| Sbjct 29683 GCCGAGACGAGGG 29671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570302779227280