Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq520 170 4e-37 seq247 167 5e-36 seq648 131 4e-25 >seq520 Length=32656 Score = 170 bits (188), Expect = 4e-37 Identities = 157/199 (79%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| ||||| || ||||| || || |||||||| |||||||| ||||| Sbjct 23573 CGAAGGCGCAGGACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGCGAGGGTG 23632 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| |||||||| || || || ||||| || |||| ||| Sbjct 23633 CGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCT 23692 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| || || ||||| || Sbjct 23693 TCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGG 23752 Query 211074 GTGATCGTCTTTCCCGTGA 211092 ||||| ||||| ||||||| Sbjct 23753 GTGATGGTCTTACCCGTGA 23771 >seq247 Length=13427 Score = 167 bits (184), Expect = 5e-36 Identities = 151/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| ||||| || || |||||||| |||||||| || || | ||||| Sbjct 6240 AGCACCAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCCATCC 6181 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || |||||||| || | || ||||||||| Sbjct 6180 TCAAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCC 6121 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||||| ||||||||||| || || |||||||| ||||| ||| Sbjct 6120 TGGATTTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 6061 Query 211083 TTTCCCGTGA 211092 || ||||||| Sbjct 6060 TTACCCGTGA 6051 >seq648 Length=41169 Score = 131 bits (144), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||| || ||||| || | |||||||| || ||||| | || | | ||| Sbjct 13554 AGCACCAGGTCGAGCGTGGATTCCATCTGGATGTTGTAGTCCGCCAACGTGCGGACGTCT 13495 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||| |||| ||||||| || || || ||| | || || | |||||| ||||| Sbjct 13494 TCGAGCTGCCTGCCCACGAAGATGAGACGCTGGTGG-CGGGGGGTAAGCCTTCCCTGTCC 13436 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| || |||||||| || ||||| ||| Sbjct 13435 TGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCAACCTCCAGGGTGATGGTC 13376 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 || || || | ||||| || || | |||||||| Sbjct 13375 TTGCCAGTCAACGTCTTCACGAAGATCTGCATTT 13342 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || | |||||| || ||||| | || | || ||| Sbjct 13797 AGCACCAGGTGGAGCGTGGATTCCATCCGGATGTCGTAGTCCGCCATTGTGCGGCCGTCT 13738 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||| | ||| | | || || ||||| || || | |||||||||||| Sbjct 13737 TCGAGAATAATGCCCGTGAATAAGATACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCC 13678 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || |||||||| |||||||||| || |||||||| || ||||| ||| Sbjct 13677 TGAATATTCGCCTTCACGTTGGCGATGGTGTCCGAAGACTCAACCTCCAGGGTGATGGTC 13618 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTG 211111 || || || ||||||| || || | ||| Sbjct 13617 TTGCCAGTCGGAGTCTTCACGAAGATCTG 13589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159136123602185