Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq520 149 1e-30 seq247 127 5e-24 seq648 122 2e-22 >seq520 Length=32656 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | |||||| ||||| || |||||||| || |||| |||||||| || | || Sbjct 23573 CGAAGGCGCAGGACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGCGAGGGTG 23632 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || |||||||| ||||| ||| Sbjct 23633 CGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCT 23692 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| || ||||||||||| || | ||||| || | Sbjct 23693 TCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAGG 23752 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 23753 GTGATGGTCTTACCCGT 23769 >seq247 Length=13427 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || |||||||| || |||| |||||||| || | || | ||||| Sbjct 6240 AGCACCAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCCATCC 6181 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || ||||| || || ||||| |||||||| Sbjct 6180 TCAAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCC 6121 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || |||||| ||||||||||| || | ||||| || | ||||| ||| Sbjct 6120 TGGATTTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTC 6061 Query 225682 TTGCCCGT 225689 || ||||| Sbjct 6060 TTACCCGT 6053 >seq648 Length=41169 Score = 122 bits (134), Expect = 2e-22 Identities = 156/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||| ||| |||||||| | |||| ||||| || ||||| || | | ||| Sbjct 13554 AGCACCAGGTCGAGCGTGGATTCCATCTGGATGTTGTAGTCCGCCAACGTGCGGACGTCT 13495 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||| | || ||||||| || || || ||| |||| || | |||||| |||| Sbjct 13494 TCGAGCTGCCTGCCCACGAAGATGAGACGCTGGTGG-CGGGGGGTAAGCCTTCCCTGTCC 13436 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || | || || || | ||||| ||| Sbjct 13435 TGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCAACCTCCAGGGTGATGGTC 13376 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715 ||||| ||||| || || | ||| | ||||||| Sbjct 13375 TTGCCAGTCAACGTCTTCACGAAGATCTGCATTT 13342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192514866421886