Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq520 140 8e-28 seq247 131 4e-25 seq648 91.5 4e-13 seq363 86.0 2e-11 >seq520 Length=32656 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| |||||||| || ||||||||||| |||||||| Sbjct 23771 TCACGGGTAAGACCATCACCCTGGAGGTGGAGTCTTCGGACACCATCGACAACGTCAAGG 23712 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| ||||| || || || |||||||| || || |||||||| || | Sbjct 23711 CTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAGCGTCTCATCTTCGCGGGCA 23652 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || || || | || || || ||||| ||| |||| || ||||| || |||| Sbjct 23651 AGCAGCTTGAGGACGGCCGCACCCTCGCGGATTACAACATCCAGAAGGAATCCACCCTGC 23592 Query 178123 ATCTTGT 178129 | || || Sbjct 23591 ACCTCGT 23585 >seq247 Length=13427 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||||||||||||||| || ||||||||||| ||||| || Sbjct 6051 TCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGACAACGTGAAGG 6110 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 || || |||||||| || || ||||| || |||||||| || || || ||||| || | Sbjct 6111 CGAAAATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGCCTCATTTTCGCGGGCA 6170 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || ||||| | || || || ||||| ||| |||| || ||||| || || | Sbjct 6171 AGCAGCTTGAGGATGGCCGCACGCTCGCGGATTACAACATCCAGAAGGAATCCACGCTTC 6230 Query 178123 ATCTTGT 178129 | || || Sbjct 6231 ACCTGGT 6237 >seq648 Length=41169 Score = 91.5 bits (100), Expect = 4e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || |||||||| ||||| || || ||| Sbjct 13347 CAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACCCTGGAGGTTGAGTCTTCGGAC 13406 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| ||||||| ||||| | || || | ||| || Sbjct 13407 ACCATCGACAACGTGAAGGCGAAGATCCAGGACAGGGAAGGCTTACCCCCCG-CCACCAG 13465 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||| || | ||||||||||| | | || | || || || ||| || Sbjct 13466 CGTCTCATCTTCGTGGGCAGGCAGCTCGAAGACGTCCGCACGTTGGCGGACTACAACATC 13525 Query 178104 CAAAAAGAATCAACACT 178120 || | ||||| || || Sbjct 13526 CAGATGGAATCCACGCT 13542 Score = 91.5 bits (100), Expect = 4e-13 Identities = 99/131 (76%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| |||| || || || || |||||||| ||||| || || ||| Sbjct 13589 CAGATCTTCGTGAAGACTCCGACTGGCAAGACCATCACCCTGGAGGTTGAGTCTTCGGAC 13648 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| ||||| || || ||||||||||| ||||| ||||| || |||||||| Sbjct 13649 ACCATCGCCAACGTGAAGGCGAATATTCAGGACAAGGAAGGCATCCCCCCCGACCAGCAG 13708 Query 178044 CGACTTATCTT 178054 || |||||| Sbjct 13709 CG---TATCTT 13716 >seq363 Length=41122 Score = 86.0 bits (94), Expect = 2e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| |||||||| ||| ||||||||||| |||||||| Sbjct 411 TCACCGGCAAGACCATCACCCTGGAGGTGGAGTCCTCCGACACCATCGACAACGTCAAGG 352 Query 178003 AAAAGATTCAGGACAAAGAAGG 178024 |||||||||||||||||||| Sbjct 351 CTAAGATTCAGGACAAAGAAGG 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203714713020386