Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Micromonas_20sp._20ASP10-01a_20[genbank_20GCA_5F001430725.1_202015- 04-28] 1,069 sequences; 19,582,411 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq520 123 2e-23 seq247 122 8e-23 >seq520 Length=32656 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||| ||||| || || | || || ||||| ||| |||||||| ||||| || || Sbjct 23564 CCGCCACCGCGAAGGCGCAGGACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCC 23623 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 | ||||||||| |||| || ||||||||||| ||||| || || ||||| ||||| | | Sbjct 23624 GCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGG 23683 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 |||| || ||||||||| || | || || | ||| | | | ||||| ||||| Sbjct 23684 GGAATGCCTTCCTTGTCC-TGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTC 23742 Query 41812 CACCTCCACCGTTATCGTTTTACCCGT 41838 |||||||| || || || |||||||| Sbjct 23743 CACCTCCAGGGTGATGGTCTTACCCGT 23769 >seq247 Length=13427 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||||| || |||||| |||||||| ||||| || || | | Sbjct 6255 CCTCCGCGCAGGCGGAGCACCAGGTGAAGCGTGGATTCCTTCTGGATGTTGTAATCCGCG 6196 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| ||||| || |||||||| ||||| | ||| Sbjct 6195 AGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCAGGGGGG 6136 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| |||||| |||| ||| | | | ||||| |||||||| Sbjct 6135 ATACCCTCCTTGTCCTGGATTTTCGCCTTC-ACGTTGTCGATGGTGTCCGAAGACTCCAC 6077 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || |||||||| Sbjct 6076 CTCGAGGGTGATGGTCTTACCCGT 6053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462297822462800