Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2517 91.5 3e-13 seq6716 89.7 1e-12 >seq2517 Length=9782 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/166 (73%), Gaps = 3/166 (2%) Strand=Plus/Plus Query 230441 GTCG-CCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGAC 230499 |||| ||| || |||||||||| | || |||| ||||||||||| || || |||||| Sbjct 5410 GTCGACCTGATCGGCATGAACGGCAAGCTGATGGCGCAGTACATCGAGTTTGTGGCCGAC 5469 Query 230500 CGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTT 230559 ||| | | || || || || | |||||| |||| || |||||||||| | Sbjct 5470 CGCCTGCTGGTGGCCCTGGGCTGCGAGAAGCAGTACCACAGCGCCAACCCCTTTGACTGG 5529 Query 230560 ATGGAGCTCATTTCGCTTCAA-GGGAAGACCAACTTCTTCGAAAAG 230604 |||||||||| | || |||| || |||||||||||||| || ||| Sbjct 5530 ATGGAGCTCA-TCAGCCTCAACGGCAAGACCAACTTCTTTGAGAAG 5574 >seq6716 Length=19574 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || |||||||||||| | || ||| ||||||||||| | ||| ||||||||| | Sbjct 4752 CTGATTGGCATGAACAGCAAGCTCATGACTCAGTACATCGAGTACGTCGCCGACCGCCTG 4693 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || | ||| || | |||||| ||||| | |||||||||| | |||||| Sbjct 4692 CTGGTGGAACTGGGGTGCGAGAAGCACTACAAAGTGCACAACCCCTTTGACTGGATGGAG 4633 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAG 230604 ||||| || | |||||||||||||||||||| ||| Sbjct 4632 CTCATCAGCCTGCCTGGGAAGACCAACTTCTTCGAGAAG 4594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057732921353600