Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1025 165 8e-36 seq6716 159 4e-34 seq2517 150 2e-31 seq2272 123 3e-23 seq1067 123 3e-23 seq2396 120 3e-22 seq1439 120 3e-22 seq2535 100 3e-16 >seq1025 Length=17526 Score = 165 bits (182), Expect = 8e-36 Identities = 167/217 (77%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 || |||| ||||||||||||||| | |||||| | ||| |||| | |||| ||| Sbjct 16618 AAAGCCGCCTGGGCGCTGCGCTGG---GGCGGCAGCGGGGCGCCCTTTGCGCAGCGGCTG 16562 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 |||| || ||| |||||||||| || ||| ||||| ||| ||||||||||||| Sbjct 16561 CTGGCGTTTGCGTGCGTCGAGGGCATCCACTTCAGCGGCAGCTTCTGCGCCATATTTTGG 16502 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 ||||||| || ||||||||||| || || || |||||||||||||||||| | ||||| Sbjct 16501 ATCAAGAAGCGTGGCCTCATGCCAGGGCTCACGTTCAGCAACGAGCTCATCAGCCGGGAC 16442 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||| ||||| ||||||||||| | |||| || Sbjct 16441 GAGGGGCTGCACACAGACTTTGCCTGCCTCCTGTACA 16405 >seq6716 Length=19574 Score = 159 bits (176), Expect = 4e-34 Identities = 136/168 (81%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||| |||||| |||||||||| ||| || ||||||||| ||||||| ||||| || Sbjct 10693 CTTCGCCGAGCGGCTGGTGGCCTACGCCGCAGTCGAGGGCATCTTCTTCAGCGGCAGCTT 10634 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 | |||||| |||||||||||||| |||||||||||||| ||||| || || |||||| Sbjct 10633 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGA 10574 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 ||||||| | | |||||||| ||||| |||||||| ||| |||| Sbjct 10573 GCTCATCAGCCGTGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCT 10526 Score = 150 bits (166), Expect = 2e-31 Identities = 134/168 (80%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||| |||||| || ||||||| | |||| || |||||| || ||||| ||||| || Sbjct 5515 CTTCGCCGAGCGGCTTGTGGCCTACACGGCTGTGGAGGGCATCCTCTTTAGCGGCAGCTT 5456 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 | |||||| || ||||||||||| |||||||||||||| ||||| || ||| |||||| Sbjct 5455 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 5396 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 ||||||| | | |||||||| ||||| |||||||| ||| |||| Sbjct 5395 GCTCATCAGCCGTGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCT 5348 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 116680 CGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCG 116739 |||||| || ||||| | |||| | || ||||| | || | |||||| |||||| Sbjct 12177 CGAGGAAGTCGACCTCGGGGACGACATGCGCCACTGGACGAGCCTCAACGACGGCGAGCG 12118 Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 ||| |||||| ||| |||||||| || ||||||||| ||||||||||||| || || Sbjct 12117 CCACTTCATCCTGCATGTGCTGGCGTTCTTCGCCGCCTCCGACGGCATCGTCTTGGAAAA 12058 Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831 |||| | ||| || |||||||||||| Sbjct 12057 CCTGGGGGCGCGGTTTCTGAAGGAGGTGCAGG 12026 >seq2517 Length=9782 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 |||||||| ||||||| ||| || ||||||||| ||||||| ||||| ||| |||| Sbjct 4481 GAGCGCCTTGTGGCCTACGCCGCGGTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGCGCC 4540 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || || ||||||||||| |||||||||||||| ||||| || ||| ||||||||||||| Sbjct 4541 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATC 4600 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 | | |||||||| ||||| |||||||| ||| |||| Sbjct 4601 AGCCGCGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCT 4641 Score = 96.9 bits (106), Expect = 4e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 116680 CGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCG 116739 ||||||||| |||||| | | |||| | | |||||||| || | | ||||||| Sbjct 2677 CGAGGAGGTCGACCTGGGCGACGACATGCGGCACTGGGAGAAGCTGTCGGGCGACGAGCG 2736 Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 ||| |||||| ||||||||| || || |||||||| ||||||||||||| ||||| Sbjct 2737 CCACTTCATCCTGCACGTGCTCGCGTTCTTCGCCGCTTCCGACGGCATCGTCCTGGAGAA 2796 Query 116800 TCTGGTCGAGCG-TTTCGCTCAGGAGGTGCAGGTGGCCGAGG 116840 |||| | ||| |||| | ||||||| ||||| | |||| Sbjct 2797 CCTGGGGGCGCGCTTTCTC-AAGGAGGTCCAGGTCCCAGAGG 2837 >seq2272 Length=9786 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || |||| |||||||| |||||||| |||| ||| Sbjct 4868 GGCATCCCTCCGGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGC 4809 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| ||||||| || || ||| ||||| || | Sbjct 4808 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTGGTGCTGCGCCTGCGC 4749 Query 40912 GGCGGC 40917 || ||| Sbjct 4748 GGTGGC 4743 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| |||||||||| || || |||| |||||||| |||||||| |||| ||| Sbjct 5877 GGCATTCCCCCGGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGC 5818 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||| |||||||||||||||||| ||||||| || || ||| ||||| || | Sbjct 5817 ACCCTGGCCGATTACAACATCCAGAAGGAGTCCACGCTCCACCTGGTGCTGCGCCTGCGC 5758 Query 40912 GGCGGC 40917 || ||| Sbjct 5757 GGTGGC 5752 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || |||| || ||||| |||||||| |||| ||| Sbjct 6376 GGCATCCCTCCGGACCAGCAGCGCCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGC 6317 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| |||||||||| | ||| ||||| || | Sbjct 6316 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGCCTGCGC 6257 Query 40912 GGCGG 40916 || || Sbjct 6256 GGTGG 6252 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| |||||||||| || || |||| ||||||||| |||||||| || | ||| Sbjct 5367 GGGATCCCCCCGGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGC 5308 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||| ||||||||| | |||||||| | ||| ||||| || | Sbjct 5307 ACCCTGGCTGACTACAACATTCAGAAGGAGTCAACGCTGCACTTGGTGCTGCGCCTGCGC 5248 Query 40912 GGCGGC 40917 || ||| Sbjct 5247 GGTGGC 5242 >seq1067 Length=17102 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| ||| ||||| |||||||| || | ||| Sbjct 11092 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGC 11151 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| ||||||| || || ||| ||||| || | Sbjct 11152 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTGGTGCTGCGCCTGCGC 11211 Query 40912 GGCGGC 40917 || ||| Sbjct 11212 GGTGGC 11217 Score = 122 bits (134), Expect = 9e-23 Identities = 105/130 (81%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 12084 GGCATCCCTCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 12143 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||| |||||||||||| |||| || || || ||| ||||| || | Sbjct 12144 ACCCTGGCCGACTACAATATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGC 12203 Query 40912 GGCGGCGGCT 40921 |||||| ||| Sbjct 12204 GGCGGCTGCT 12213 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 10618 GGCATCCCTCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 10677 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||| || || || ||| ||||| || | Sbjct 10678 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGC 10737 Query 40912 GGCGGC 40917 || ||| Sbjct 10738 GGTGGC 10743 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 10089 GGCATCCCTCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 10148 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||| |||||||||||||||||| |||| || || || ||| ||||| || | Sbjct 10149 ACCCTGGCCGATTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGT 10208 Query 40912 GGCGGC 40917 || ||| Sbjct 10209 GGTGGC 10214 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || |||| ||| ||||| |||||||| || | ||| Sbjct 11547 GGCATCCCTCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGC 11606 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || |||||||||||| ||||||||| |||| || || || ||| ||||| || | Sbjct 11607 ACTCTGGCCGACTACAACATTCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGC 11666 Query 40912 GGCGGC 40917 || ||| Sbjct 11667 GGTGGC 11672 >seq2396 Length=9575 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| || ||||| |||||||| |||| ||| Sbjct 679 GGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGC 620 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| | || ||||| || ||| ||||| || | Sbjct 619 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 560 Query 40912 GGCGGC 40917 || ||| Sbjct 559 GGTGGC 554 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| || ||||| |||||||| |||| ||| Sbjct 1137 GGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGC 1078 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| | || ||||| || ||| ||||| || | Sbjct 1077 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 1018 Query 40912 GGCGGC 40917 || ||| Sbjct 1017 GGTGGC 1012 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 165 GGCATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 106 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| | || ||||| || ||| ||||| || | Sbjct 105 ACCCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 46 Query 40912 GGCGGC 40917 || ||| Sbjct 45 GGTGGC 40 >seq1439 Length=14137 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| || ||||| |||||||| |||| ||| Sbjct 2884 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGC 2943 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| | || || || || ||| ||||| || | Sbjct 2944 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTGCGCCTGCGC 3003 Query 40912 GGCGGC 40917 |||||| Sbjct 3004 GGCGGC 3009 >seq2535 Length=8865 Score = 100 bits (110), Expect = 3e-16 Identities = 103/134 (77%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 ||||||| ||||||||||||||| |||||||| | || || |||| |||| ||| Sbjct 707 AAGGCCGCCTGGGCGCTGCGCTGG---GCCGGCAGCGGCGCGGCGTTCGCGCAGCGGCTG 651 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 |||| || ||| |||||||||| || ||| ||||| ||| ||||||||| ||| Sbjct 650 CTGGCGTTTGCGTGCGTCGAGGGCATCCACTTCAGCGGCAGCTTCTGCGCCATATTCTGG 591 Query 117104 CTCAAGAAACGCGG 117117 |||||||| ||||| Sbjct 590 CTCAAGAAGCGCGG 577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515175921587200