Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2272 84.2 3e-11 seq1067 84.2 3e-11 >seq2272 Length=9786 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| |||| || |||||| ||||| ||||| |||||||| || || | Sbjct 5255 CGCAGCACCAAGTGCAGCGTTGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCA 5314 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || |||||||| || ||||| || || ||||||||||| Sbjct 5315 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 5355 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| |||| ||| |||||| || || ||||| |||||||| || || || Sbjct 6264 CGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCG 6323 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || |||||||| || || || || || ||||||||||| Sbjct 6324 TCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTC 6364 >seq1067 Length=17102 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | ||| |||||| || || |||||||| ||||| || || || Sbjct 10201 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGGCCG 10142 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || |||||||| |||||||| || || ||||||||||| Sbjct 10141 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 10101 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | ||| |||||| ||||| ||||| || |||||||| || | Sbjct 11659 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCA 11600 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || |||||||| |||||||| || || ||||||||||| Sbjct 11599 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 11559 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | ||| |||||| || |||||||| || ||||| || || || Sbjct 12196 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCG 12137 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || |||||||| |||||||| || || ||||||||||| Sbjct 12136 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 12096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571769567321600