Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3912 113 4e-20 seq1025 96.9 3e-15 seq2517 87.8 2e-12 >seq3912 Length=5383 Score = 113 bits (124), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 23351 CTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCT 23410 ||||| || || || ||||| || ||||| ||||| || || |||||| ||||||| Sbjct 942 CTCATGAAGAGGTCGTTGATCCAGAGGGCGTAAAACAGGTCACGCGCGCGCGCCTCCTCC 1001 Query 23411 TTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGG 23470 || ||| |||||| || || | ||||| ||||||||||| ||||| ||||| ||| Sbjct 1002 TTCCCGTGGTTCTTGCGCAGCTCGATGAAGTCAAACACGTCCGCGTGCCAGGGCTCCAGG 1061 Query 23471 TAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517 || | |||||||||||| | ||| ||||||||| || ||||| Sbjct 1062 TAGATCGCAAACGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTA 1108 >seq1025 Length=17526 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 57970 AGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCA 58028 || |||| | ||||| || |||||| || || ||| |||||||| |||| || Sbjct 16569 AGCGGCTGCTGGCGTTTGCGTGCGTCGAGGGCATCCACTTCAGCGGCAGCTTCTGCGCCA 16510 Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATA 58088 |||||||||| ||||| || ||||| ||||| || || ||||| ||||||||| | || Sbjct 16509 -TATTTTGGATCAAGAAGCGTGGCCTCATGCCAGGGCTCACGTTCAGCAACGAGCTCATC 16451 Query 58089 TCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 || |||||||| || || || || ||||| ||||| ||||| Sbjct 16450 AGCCGGGACGAGGGGCTGCACACAGACTTTGCCTGCCTCCTGTAC 16406 >seq2517 Length=9782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT- 58021 ||| | ||| | || | || | |||||| ||||| || || ||||| |||||||| Sbjct 4475 TTCTCGGAGCGCCTTGTGGCCTACGCCGCGGTCGAGGGCATCTTCTTCAGCGGCAGCTTC 4534 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 |||| || | || ||| | ||||| |||||||| ||||| ||||| || || |||||| Sbjct 4535 TGCGCCA-TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 4593 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 | | || ||||||||||| || || || || |||| ||||| Sbjct 4594 GCTCATCAGCCGCGACGAGGGCCTGCACACCGACTTTGGCTGCCT 4638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445728955622400