Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6716 107 3e-18 seq3912 98.7 1e-15 seq2517 98.7 1e-15 >seq6716 Length=19574 Score = 107 bits (118), Expect = 3e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TG 125475 |||||| | |||||||| | |||||| || |||||||||||||| || || || || Sbjct 10690 CGCCGAGCGGCTGGTGGCCTACGCCGCAGTCGAGGGCATCTTCTTCAGCGGCAGCTTCTG 10631 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 || ||||||||||||||||||||||||| |||||||| || || || |||||| Sbjct 10630 CG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGAGC 10572 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTG 125571 | || || ||||||||||| ||| ||||||| Sbjct 10571 TCATCAGCCGTGACGAGGGCCTGCACACCGACTTTG 10536 Score = 95.1 bits (104), Expect = 2e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TG 125475 |||||| | || ||||| | | | || || ||||||||| ||||| || || || || Sbjct 5512 CGCCGAGCGGCTTGTGGCCTACACGGCTGTGGAGGGCATCCTCTTTAGCGGCAGCTTCTG 5453 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 || ||||||| ||||||||||||||||| |||||||| || || || | |||||| Sbjct 5452 CG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGC 5394 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTG 125571 | || || ||||||||||| ||| ||||||| Sbjct 5393 TCATCAGCCGTGACGAGGGCCTGCACACCGACTTTG 5358 >seq3912 Length=5383 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 97244 CGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCA 97302 |||| || ||||| ||||| || | || |||||||||||||| ||||||| ||||||| Sbjct 236 CGTGCAACCGCAAGAGCAATCAGCAGAACCTGGGCACCATCAAGTGCTCCAACCTGTGCA 177 Query 97303 CGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCA 97362 | || ||||| |||||| || | || |||||||| || || ||| ||||| ||| || Sbjct 176 CCGAGATTGTGGAGTACACCGCCCCCGACGAGACCGCGGTGTGCAACCTGGCGTCGATCG 117 Query 97363 ATCTGCCCAAGTTTGT 97378 ||||| |||||| Sbjct 116 CGCTGCCGCGGTTTGT 101 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||| || || ||||| | || ||||| |||| || |||||||||||| Sbjct 1099 CAGGGCGGCGGCAAGCGCAAGGGCGCGTTTGCGATCTACCTGGAGCCCTGGCACGCGGAC 1040 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || |||||||| |||||| ||||||| ||| || || ||||| || || | ||| Sbjct 1039 GTGTTTGACTTCATCGAGCTGCGCAAGAACCACGGGAAGGAGGAGGCGCGCGCGCGTGAC 980 Query 96996 TTGTTTTATGCACTCTGG 97013 ||||||| || |||||| Sbjct 979 CTGTTTTACGCCCTCTGG 962 >seq2517 Length=9782 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTT 125485 || ||||| | |||||| || |||||||||||||| || || || ||| |||||||| Sbjct 4487 CTTGTGGCCTACGCCGCGGTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGC-GCCATCTT 4545 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||||||||||||||||| |||||||| || || || | |||||| | || || Sbjct 4546 CTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCAGCCG 4605 Query 125546 AGACGAGGGCCTACACTGTGACTTTG 125571 ||||||||||| ||| ||||||| Sbjct 4606 CGACGAGGGCCTGCACACCGACTTTG 4631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740996951027200