Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq6720 691 0.0 seq6719 98.7 1e-15 >seq6720 Length=135362 Score = 691 bits (766), Expect = 0.0 Identities = 728/955 (76%), Gaps = 2/955 (0%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 || || |||||| | || || || ||||| | || | |||||||| || | | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTT-ATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||| | | ||||| | ||||| || ||| | | |||||||| || || Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || ||||| || || ||||| || || ||| |||||||| || | ||||| || || Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 |||||||||||||||| |||||||| | ||||| ||||| ||||||||||| || || Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672 ||||||||||||||| | || |||||| |||| || ||||||||||| ||| || | || Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732 | ||||||| | | ||||| |||||||||||||| ||||||||||| |||||||| Sbjct 37095 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 37036 Query 135733 ACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGC 135792 | |||||||| |||||||| ||||| ||||||||||| || || || ||||| ||||| Sbjct 37035 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 36976 Query 135793 TGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCAT 135852 || ||| | ||||||| | ||||||||||||||| |||||||||||| | || || Sbjct 36975 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 36916 Query 135853 TTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCC 135912 ||||| ||||| |||| |||| | || ||||| || || ||||||||| | ||||| || Sbjct 36915 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 36856 Query 135913 TTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGG 135972 ||||||||||| || |||||||| || || |||||||| | ||||| |||||||| || Sbjct 36855 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 36796 Query 135973 ATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGG 136032 || | || || || | | ||||| || ||||| ||||| ||| | || Sbjct 36795 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 36736 Query 136033 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGG 136092 |||||| || |||||||||||||||||||||||||| || ||||| || |||||||| || Sbjct 36735 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 36676 Query 136093 TCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGC 136152 |||| | ||||||||||| || || ||||||||||||||||| ||||||| ||| | || Sbjct 36675 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 36616 Query 136153 TGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAA 136212 ||||||||| || || | || ||||| |||| | || |||| || ||||| ||||| Sbjct 36615 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 36556 Query 136213 CCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACAC 136272 | | || || |||||||||||||| || |||| ||| ||||||||||| | ||||| Sbjct 36555 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 36496 Query 136273 CTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 ||||| || | | || |||||| | |||||||| || |||||||| ||| Sbjct 36495 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGT 36441 Score = 691 bits (766), Expect = 0.0 Identities = 728/955 (76%), Gaps = 2/955 (0%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 || || |||||| | || || || ||||| | || | |||||||| || | | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTT-ATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||| | | ||||| | ||||| || ||| | | |||||||| || || Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || ||||| || || ||||| || || ||| |||||||| || | ||||| || || Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 |||||||||||||||| |||||||| | ||||| ||||| ||||||||||| || || Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672 ||||||||||||||| | || |||||| |||| || ||||||||||| ||| || | || Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732 | ||||||| | | ||||| |||||||||||||| ||||||||||| |||||||| Sbjct 108553 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 108612 Query 135733 ACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGC 135792 | |||||||| |||||||| ||||| ||||||||||| || || || ||||| ||||| Sbjct 108613 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 108672 Query 135793 TGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCAT 135852 || ||| | ||||||| | ||||||||||||||| |||||||||||| | || || Sbjct 108673 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 108732 Query 135853 TTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCC 135912 ||||| ||||| |||| |||| | || ||||| || || ||||||||| | ||||| || Sbjct 108733 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 108792 Query 135913 TTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGG 135972 ||||||||||| || |||||||| || || |||||||| | ||||| |||||||| || Sbjct 108793 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 108852 Query 135973 ATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGG 136032 || | || || || | | ||||| || ||||| ||||| ||| | || Sbjct 108853 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 108912 Query 136033 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGG 136092 |||||| || |||||||||||||||||||||||||| || ||||| || |||||||| || Sbjct 108913 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 108972 Query 136093 TCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGC 136152 |||| | ||||||||||| || || ||||||||||||||||| ||||||| ||| | || Sbjct 108973 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 109032 Query 136153 TGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAA 136212 ||||||||| || || | || ||||| |||| | || |||| || ||||| ||||| Sbjct 109033 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 109092 Query 136213 CCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACAC 136272 | | || || |||||||||||||| || |||| ||| ||||||||||| | ||||| Sbjct 109093 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 109152 Query 136273 CTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 ||||| || | | || |||||| | |||||||| || |||||||| ||| Sbjct 109153 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGT 109207 Score = 583 bits (646), Expect = 1e-161 Identities = 730/1001 (73%), Gaps = 0/1001 (0%) Strand=Plus/Plus Query 137877 GATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTT 137936 ||||||||| | | ||| || ||||| ||||| |||||||| || || || | || Sbjct 121714 GATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTA 121773 Query 137937 CCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGG 137996 || ||| ||||| || | ||||| ||| ||||||| ||||| |||||||| ||| Sbjct 121774 CCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGG 121833 Query 137997 TACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTT 138056 ||||| || || || || || ||| | ||||| ||| ||| | || || || ||| Sbjct 121834 TACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTT 121893 Query 138057 TCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 138116 |||||||| || | ||||| ||||||| | | | ||||||| ||||| ||||| Sbjct 121894 TCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAA 121953 Query 138117 GGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGG 138176 || || | || |||| ||| | || || | ||||||||||| || || || || Sbjct 121954 GGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGT 122013 Query 138177 GCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCGTCTGGTAGGCATC 138236 || ||| || | ||||| || ||| | || || ||||| || | ||| ||| | | Sbjct 122014 GCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGTTCAGTAAACTTA 122073 Query 138237 CGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTG 138296 ||||| || |||||||| || ||||||| || || ||||| || || || || | Sbjct 122074 CGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTA 122133 Query 138297 ATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATC 138356 || || ||||| |||||||| |||||||||| || || |||||||| || || || Sbjct 122134 ATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATT 122193 Query 138357 TTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATG 138416 ||||| || | || ||| | || |||||||| |||||||| || ||||| || || ||| Sbjct 122194 TTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATG 122253 Query 138417 ATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTA 138476 ||||| || || ||| || | |||| ||||| | |||||||||||||||||||||||| Sbjct 122254 ATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTA 122313 Query 138477 GAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACT 138536 ||||||||| | | |||||||| || | || || || |||||| | ||||| Sbjct 122314 GAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACG 122373 Query 138537 CAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGA 138596 |||| |||||||| || || ||||| || ||||| | | |||||| ||||| ||||| Sbjct 122374 CAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGT 122433 Query 138597 ATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGT 138656 | |||||| || || |||||| | |||||||||||| | |||||||| || | ||| Sbjct 122434 GTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGT 122493 Query 138657 CTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTC 138716 || |||| | ||||||| || | ||| | ||||||||| |||| || || || ||| Sbjct 122494 CTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTC 122553 Query 138717 GTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAAC 138776 || || ||||| |||||||| || |||||||| ||||| || || |||||||| || ||| Sbjct 122554 GTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAAC 122613 Query 138777 ATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAAC 138836 ||||||| ||||||||| | ||||| ||||||||| | || || || |||||| | Sbjct 122614 CTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGC 122673 Query 138837 TTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 || || || || ||||||||||| || | || |||||||| Sbjct 122674 TTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 >seq6719 Length=93840 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165218 TTGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTG 165277 |||| || |||||||||||||||||||| | ||||||||||| |||||||| ||||||| Sbjct 38487 TTGCGCAGATGGCGGAATTGGTAGACGCGTTAGGTTTAGGTTCTAGTGAATTTATTCGTG 38428 Query 165278 GAGGTTCAAGTCCT 165291 ||||||||||||| Sbjct 38427 CAGGTTCAAGTCCT 38414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627915250688000