Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq6720 569 6e-158 >seq6720 Length=135362 Score = 569 bits (630), Expect = 6e-158 Identities = 720/987 (73%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||||||||| |||| || || ||||| | || | |||||||| || || | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||||||||| || | ||||| || || || ||| ||| |||||||| || Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 37275 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || |||||||||||||| || || ||| | ||||| ||||| Sbjct 37274 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 37215 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || || ||||| || | | || | || || ||||| || || ||||| || || || Sbjct 37214 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 37155 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | ||||||| ||||||||||||||||| ||||| || ||| | | || Sbjct 37154 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 37095 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | |||||||||| |||| || ||| | ||| ||| | |||||||||| |||||| | Sbjct 37094 TGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 37035 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 ||||| ||| | || ||||| | || || || |||| ||| || | || || ||| Sbjct 37034 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCA 36975 Query 19710 GTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATC 19769 || || | | |||||| | || ||||| ||| ||||||||||||| | |||||| Sbjct 36974 GTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 36915 Query 19770 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 19829 ||||||||||| ||||| ||| ||||||||||||| || ||||| || | ||||| || Sbjct 36914 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCA 36855 Query 19830 TTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGA 19889 ||||||||| | ||||||||||| ||||| ||||| || | ||||| ||||||||||| Sbjct 36854 TTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 36795 Query 19890 AGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGC 19949 || || ||||| || | ||| ||||| ||||| | | ||| ||| | || Sbjct 36794 TCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGT 36735 Query 19950 TATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 20009 || || || || ||||| |||||||| || || || || ||||||||||| |||||||| Sbjct 36734 TACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGT 36675 Query 20010 AGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCT 20069 | || || || ||||| || || ||||| || |||||||| ||||| ||||| | ||| Sbjct 36674 CGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCT 36615 Query 20070 ACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAAC 20129 ||| || || | |||| ||| | || | | || | | |||||||| |||||| Sbjct 36614 GCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAAC 36555 Query 20130 CTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCA-ACGGAAAGATAATCCCAAC 20188 | || || || ||||| ||||| ||||| |||||| ||| | || || | || Sbjct 36554 TTAAACGGGTTCAACTTCAACCAATCAGTTGTTGAT-TCACAAGGTCGTGTATTAAACAC 36496 Query 20189 ATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGC 20248 |||||||| | | || | |||||| | || | ||||| |||||||| || || || Sbjct 36495 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 36436 Query 20249 TCATAACTTCCCACTTGATTTAGCTTC 20275 ||| ||||||||| | || |||||||| Sbjct 36435 TCACAACTTCCCATTAGACTTAGCTTC 36409 Score = 569 bits (630), Expect = 6e-158 Identities = 720/987 (73%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||||||||| |||| || || ||||| | || | |||||||| || || | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||||||||| || | ||||| || || || ||| ||| |||||||| || Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 108373 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || |||||||||||||| || || ||| | ||||| ||||| Sbjct 108374 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 108433 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || || ||||| || | | || | || || ||||| || || ||||| || || || Sbjct 108434 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 108493 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | ||||||| ||||||||||||||||| ||||| || ||| | | || Sbjct 108494 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 108553 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | |||||||||| |||| || ||| | ||| ||| | |||||||||| |||||| | Sbjct 108554 TGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 108613 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 ||||| ||| | || ||||| | || || || |||| ||| || | || || ||| Sbjct 108614 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCA 108673 Query 19710 GTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATC 19769 || || | | |||||| | || ||||| ||| ||||||||||||| | |||||| Sbjct 108674 GTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 108733 Query 19770 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 19829 ||||||||||| ||||| ||| ||||||||||||| || ||||| || | ||||| || Sbjct 108734 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCA 108793 Query 19830 TTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGA 19889 ||||||||| | ||||||||||| ||||| ||||| || | ||||| ||||||||||| Sbjct 108794 TTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 108853 Query 19890 AGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGC 19949 || || ||||| || | ||| ||||| ||||| | | ||| ||| | || Sbjct 108854 TCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGT 108913 Query 19950 TATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 20009 || || || || ||||| |||||||| || || || || ||||||||||| |||||||| Sbjct 108914 TACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGT 108973 Query 20010 AGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCT 20069 | || || || ||||| || || ||||| || |||||||| ||||| ||||| | ||| Sbjct 108974 CGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCT 109033 Query 20070 ACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAAC 20129 ||| || || | |||| ||| | || | | || | | |||||||| |||||| Sbjct 109034 GCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAAC 109093 Query 20130 CTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCA-ACGGAAAGATAATCCCAAC 20188 | || || || ||||| ||||| ||||| |||||| ||| | || || | || Sbjct 109094 TTAAACGGGTTCAACTTCAACCAATCAGTTGTTGAT-TCACAAGGTCGTGTATTAAACAC 109152 Query 20189 ATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGC 20248 |||||||| | | || | |||||| | || | ||||| |||||||| || || || Sbjct 109153 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 109212 Query 20249 TCATAACTTCCCACTTGATTTAGCTTC 20275 ||| ||||||||| | || |||||||| Sbjct 109213 TCACAACTTCCCATTAGACTTAGCTTC 109239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144430073560320