Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq6720 724 0.0 >seq6720 Length=135362 Score = 724 bits (802), Expect = 0.0 Identities = 757/991 (76%), Gaps = 6/991 (1%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 || || || ||| | || ||||| | ||| | | || | |||||||| ||||| | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAAC---ATGCTTTATCGTAGCATTCATCGCAGCA 211686 |||||||| || | || | || ||| | || | |||||| || ||||||||||| Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCG--GC-TTCATCGCAGCT 37278 Query 211687 CCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAAC 211746 ||||| || |||||||| || |||||||| ||||| ||||||| || | || |||||| Sbjct 37277 CCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAAC 37218 Query 211747 AACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCT 211806 ||||||||||||||||| || | || | || |||||||||||| | |||||||| || Sbjct 37217 AACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCA 37158 Query 211807 ATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTA 211866 || |||||||| || || | || |||||| | ||||| |||||||||||||| || | Sbjct 37157 ATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATC 37098 Query 211867 ATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATAC 211926 | | ||||||| | | || | || | |||||||| | ||||||||||||| ||| Sbjct 37097 GTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 37038 Query 211927 CGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTC 211986 ||||||||||||||||||||||||||||||||||| ||||| || ||| | || || Sbjct 37037 CGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACT 36978 Query 211987 GCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGT 212046 || |||||| | | |||||| |||| || ||||| ||||| || ||||||||||||||| Sbjct 36977 GCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGT 36918 Query 212047 ATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 || || || || |||||||||||| ||||||||||||| || || ||||| | |||||| Sbjct 36917 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCAC 36858 Query 212107 CCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCAC 212166 |||||||| ||| ||||||||| ||| | || ||||| |||||||||| ||||||||| Sbjct 36857 CCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCAC 36798 Query 212167 GGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTAT 212226 ||||| | || || || ||| | ||||||||||| |||| || || ||| | Sbjct 36797 GGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAA 36738 Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 |||||||| || || |||||||||||||| || |||||||| |||||||| || ||||| Sbjct 36737 GGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTT 36678 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346 ||| | | |||||||| || ||||||||||||||| | |||||||||||| | Sbjct 36677 GGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 36618 Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406 || | ||||| || ||||| | ||||| || || | ||| | | || ||||||||| Sbjct 36617 GCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTC 36558 Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCT 212466 ||| |||| || ||||||||||||||||||||||||||| || |||| || | Sbjct 36557 AACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAAC 36498 Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| ||| | | ||| | || ||| | ||||||||||| ||||||||| | || Sbjct 36497 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 36438 Query 212527 GCACACAACTTCCCACTTGACTTAGCATCTG 212557 || |||||||||||| | |||||||| |||| Sbjct 36437 GCTCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 724 bits (802), Expect = 0.0 Identities = 757/991 (76%), Gaps = 6/991 (1%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 || || || ||| | || ||||| | ||| | | || | |||||||| ||||| | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAAC---ATGCTTTATCGTAGCATTCATCGCAGCA 211686 |||||||| || | || | || ||| | || | |||||| || ||||||||||| Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCG--GC-TTCATCGCAGCT 108370 Query 211687 CCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAAC 211746 ||||| || |||||||| || |||||||| ||||| ||||||| || | || |||||| Sbjct 108371 CCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAAC 108430 Query 211747 AACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCT 211806 ||||||||||||||||| || | || | || |||||||||||| | |||||||| || Sbjct 108431 AACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCA 108490 Query 211807 ATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTA 211866 || |||||||| || || | || |||||| | ||||| |||||||||||||| || | Sbjct 108491 ATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATC 108550 Query 211867 ATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATAC 211926 | | ||||||| | | || | || | |||||||| | ||||||||||||| ||| Sbjct 108551 GTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 108610 Query 211927 CGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTC 211986 ||||||||||||||||||||||||||||||||||| ||||| || ||| | || || Sbjct 108611 CGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACT 108670 Query 211987 GCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGT 212046 || |||||| | | |||||| |||| || ||||| ||||| || ||||||||||||||| Sbjct 108671 GCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGT 108730 Query 212047 ATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 || || || || |||||||||||| ||||||||||||| || || ||||| | |||||| Sbjct 108731 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCAC 108790 Query 212107 CCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCAC 212166 |||||||| ||| ||||||||| ||| | || ||||| |||||||||| ||||||||| Sbjct 108791 CCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCAC 108850 Query 212167 GGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTAT 212226 ||||| | || || || ||| | ||||||||||| |||| || || ||| | Sbjct 108851 GGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAA 108910 Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 |||||||| || || |||||||||||||| || |||||||| |||||||| || ||||| Sbjct 108911 GGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTT 108970 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346 ||| | | |||||||| || ||||||||||||||| | |||||||||||| | Sbjct 108971 GGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 109030 Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406 || | ||||| || ||||| | ||||| || || | ||| | | || ||||||||| Sbjct 109031 GCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTC 109090 Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCT 212466 ||| |||| || ||||||||||||||||||||||||||| || |||| || | Sbjct 109091 AACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAAC 109150 Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| ||| | | ||| | || ||| | ||||||||||| ||||||||| | || Sbjct 109151 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 109210 Query 212527 GCACACAACTTCCCACTTGACTTAGCATCTG 212557 || |||||||||||| | |||||||| |||| Sbjct 109211 GCTCACAACTTCCCATTAGACTTAGCTTCTG 109241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807487365363200