Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq6720 731 0.0 >seq6720 Length=135362 Score = 731 bits (810), Expect = 0.0 Identities = 757/989 (77%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 |||||||||||| | || || ||||| || || | ||| | |||||||| ||||| ||| Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| || | |||| ||| | || |||||| | | |||||||| |||||| Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 37275 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| |||||||| || ||| | || |||||| | |||||||| ||||| ||||||||| Sbjct 37274 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 37215 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 ||||||||||||||| | | || | || |||||||| || | |||||||| || || Sbjct 37214 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 37155 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || || | ||||||||||| |||||||| ||||||||||| ||| | || Sbjct 37154 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 37095 Query 170966 TTCCACTTCCTTATT-GGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | ||||||| ||||| || | | | ||||||||| | |||||||||| || ||| | Sbjct 37094 TGCCACTTC-TTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 37036 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 |||| ||| | |||||||| ||||| || |||||||| || ||| |||| ||| ||| Sbjct 37035 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 36976 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 ||||||| | | || ||| |||| || ||||| ||||||||||||||||| ||||||| Sbjct 36975 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 36916 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 ||| ||||| |||||||||||| |||| |||||||| || |||||||| |||||||||| Sbjct 36915 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 36856 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 ||||| ||| |||||| || ||| | || |||||| | ||| || |||||||| Sbjct 36855 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 36796 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGG 171324 ||| |||| || || || ||||| | || || ||||| ||||| | ||| | || Sbjct 36795 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 36736 Query 171325 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 171384 || || || || ||||||||||| || || ||||| || ||||| || || ||||| || Sbjct 36735 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 36676 Query 171385 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 | | ||||||||||| || |||||||||||||||||||||||||||||||||||| | || Sbjct 36675 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 36616 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 || | || ||| |||| | ||||| || || | ||| | | || ||||||||||| Sbjct 36615 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 36556 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAAC 171564 | | ||||| ||||||||||||||||||||||| ||| || | || | || || Sbjct 36555 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 36496 Query 171565 ATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGC 171624 |||| || | | ||| | || ||| | || |||||||| ||||| ||| | || || Sbjct 36495 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 36436 Query 171625 ACACAACTTCCCACTAGACCTAGCATCTG 171653 |||||||||||| ||||| |||| |||| Sbjct 36435 TCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 731 bits (810), Expect = 0.0 Identities = 757/989 (77%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 |||||||||||| | || || ||||| || || | ||| | |||||||| ||||| ||| Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| || | |||| ||| | || |||||| | | |||||||| |||||| Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 108373 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| |||||||| || ||| | || |||||| | |||||||| ||||| ||||||||| Sbjct 108374 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 108433 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 ||||||||||||||| | | || | || |||||||| || | |||||||| || || Sbjct 108434 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 108493 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || || | ||||||||||| |||||||| ||||||||||| ||| | || Sbjct 108494 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 108553 Query 170966 TTCCACTTCCTTATT-GGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | |||||| |||||| || | | | ||||||||| | |||||||||| || ||| | Sbjct 108554 TGCCACTT-CTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 108612 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 |||| ||| | |||||||| ||||| || |||||||| || ||| |||| ||| ||| Sbjct 108613 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 108672 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 ||||||| | | || ||| |||| || ||||| ||||||||||||||||| ||||||| Sbjct 108673 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 108732 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 ||| ||||| |||||||||||| |||| |||||||| || |||||||| |||||||||| Sbjct 108733 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 108792 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 ||||| ||| |||||| || ||| | || |||||| | ||| || |||||||| Sbjct 108793 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 108852 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGG 171324 ||| |||| || || || ||||| | || || ||||| ||||| | ||| | || Sbjct 108853 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 108912 Query 171325 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 171384 || || || || ||||||||||| || || ||||| || ||||| || || ||||| || Sbjct 108913 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 108972 Query 171385 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 | | ||||||||||| || |||||||||||||||||||||||||||||||||||| | || Sbjct 108973 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 109032 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 || | || ||| |||| | ||||| || || | ||| | | || ||||||||||| Sbjct 109033 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 109092 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAAC 171564 | | ||||| ||||||||||||||||||||||| ||| || | || | || || Sbjct 109093 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 109152 Query 171565 ATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGC 171624 |||| || | | ||| | || ||| | || |||||||| ||||| ||| | || || Sbjct 109153 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 109212 Query 171625 ACACAACTTCCCACTAGACCTAGCATCTG 171653 |||||||||||| ||||| |||| |||| Sbjct 109213 TCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 544 bits (602), Expect = 9e-150 Identities = 744/1043 (71%), Gaps = 21/1043 (2%) Strand=Plus/Plus Query 171792 TGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 171851 |||||||||| | |||||| |||||| ||| ||||| || || | || ||||| Sbjct 121699 TGGTTTGACGATTGTGATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCA 121758 Query 171852 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 171911 |||||| | | ||||||||||| || | ||| | || |||||||| || || || Sbjct 121759 GGTCTTCTTTTATTACCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACA 121818 Query 171912 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTT 171971 || || || || ||||||||||||||| | ||| | || || | || || ||||| Sbjct 121819 TTTGTTACTTCTTGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTC 121878 Query 171972 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGG 172031 |||||||| ||||| || || || | | ||||| |||| | |||| || | ||| Sbjct 121879 TTAACTGCTGCAGTTTCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGG 121938 Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091 |||||||| || ||||| || || ||| |||| |||||||||||| |||||| ||| Sbjct 121939 GGACCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTT 121998 Query 172092 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 172151 |||||| | ||||| | ||||| | || ||||| ||| | | || ||||| |||||| Sbjct 121999 GTAGCACTGCATGGTGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCA 122058 Query 172152 GGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTC 172211 | || ||||||| || |||||| | || ||||| ||| ||||| ||||| Sbjct 122059 CGTTCAGTAAACTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTT 122118 Query 172212 ACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTT 172271 | ||| |||| || || |||||||| | ||||||||||||| ||| ||| Sbjct 122119 GTTTCTGTATTTTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTT 122178 Query 172272 GGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTT 172331 ||||| || || || || |||| ||| |||||| | || ||||||||||| || ||| Sbjct 122179 GGTGTTGCCGCTATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTT 122238 Query 172332 AATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATA 172391 || ||||| || |||||||| || || ||| | | |||| || || ||||||| || Sbjct 122239 AACCCATTCCACATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATT 122298 Query 172392 CATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAG 172451 |||||||| |||||| | || || | | |||| | ||| ||| Sbjct 122299 CATGGTGCTACAGTAGAAAATACTCTTTTCGAAG------------ATGGTGATGGT--- 122343 Query 172452 ATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATG 172511 ||| || ||| | ||||| | ||||| || | ||||||||||| |||| Sbjct 122344 ------GCTAACACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAAACTTACTCTATG 122397 Query 172512 ATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTC 172571 | || ||||| |||||||||||||| || |||||| |||| |||||||||||| | | Sbjct 122398 GTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGG 122457 Query 172572 TTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATC 172631 ||||||||| ||||||| || || ||||| | ||| | |||| || |||| ||| | Sbjct 122458 TTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTGCTATTGGTGTT 122517 Query 172632 GTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCA 172691 |||||| | || |||||| | | || |||||||| || || |||||||| | || || Sbjct 122518 GTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGATTCGTGCTGCT 122577 Query 172692 GAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGA 172751 ||||| ||||| |||||||| ||||||||||| ||| ||||||||||||||||||| | Sbjct 122578 GAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATGAAGGTATCCGT 122637 Query 172752 GCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTG 172811 || |||||| | | || || || || || ||| || |||||||||||||| || Sbjct 122638 GCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAGAAGAAGTATTA 122697 Query 172812 CCACGAGGCAACGCACTATAAAT 172834 || || || ||||| |||||||| Sbjct 122698 CCTCGTGGTAACGCTCTATAAAT 122720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570220897420800