Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2396 125 7e-24 seq1067 122 8e-23 seq2272 114 1e-20 seq1439 113 4e-20 seq3912 98.7 9e-16 seq6716 95.1 1e-14 seq1025 84.2 2e-11 >seq2396 Length=9575 Score = 125 bits (138), Expect = 7e-24 Identities = 104/127 (82%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | |||||||||||| || |||||||| || Sbjct 40 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 99 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | |||||||||||||||||| Sbjct 100 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 159 Query 131127 GATTCCT 131133 ||| ||| Sbjct 160 GATGCCT 166 Score = 122 bits (134), Expect = 8e-23 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | |||||||||||| || |||||||| ||| Sbjct 554 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 613 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| || |||| | ||||||||||||||| || Sbjct 614 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 673 Query 131127 GATTCCT 131133 ||| ||| Sbjct 674 GATGCCT 680 Score = 122 bits (134), Expect = 8e-23 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | |||||||||||| || |||||||| ||| Sbjct 1012 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 1071 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| || |||| | ||||||||||||||| || Sbjct 1072 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 1131 Query 131127 GATTCCT 131133 ||| ||| Sbjct 1132 GATGCCT 1138 >seq1067 Length=17102 Score = 122 bits (134), Expect = 8e-23 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||||| | || | ||| |||||||| || |||||||||||| Sbjct 10214 GCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 10155 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | ||||||||||||||||| Sbjct 10154 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGG 10095 Query 131127 GATTCCT 131133 ||| ||| Sbjct 10094 GATGCCT 10088 Score = 122 bits (134), Expect = 8e-23 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 10743 GCCACCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 10684 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | ||||||||||||||||| Sbjct 10683 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGG 10624 Query 131127 GATTCCT 131133 ||| ||| Sbjct 10623 GATGCCT 10617 Score = 116 bits (128), Expect = 3e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | ||| |||||||| ||||||||||| ||| Sbjct 11672 GCCACCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGC 11613 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||||| Sbjct 11612 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAGG 11553 Query 131127 GATTCCT 131133 ||| ||| Sbjct 11552 GATGCCT 11546 Score = 114 bits (126), Expect = 1e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| ||||||| |||||||| | || | ||| |||||||| || || ||||| ||| Sbjct 12210 AGCCGCCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGG 12151 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| |||||| ||||||||||| ||| |||| | |||||||||||||||| Sbjct 12150 CCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGAG 12091 Query 131126 GGATTCCT 131133 |||| ||| Sbjct 12090 GGATGCCT 12083 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | || |||||||| || |||||||| ||| Sbjct 11217 GCCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 11158 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 11157 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGG 11098 Query 131127 GATTCCT 131133 ||| ||| Sbjct 11097 GATGCCT 11091 >seq2272 Length=9786 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 130998 TCACCATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTT 131057 ||| || | ||||||||||| |||||||| | || | || |||||||| || ||||| Sbjct 4734 TCAGCACGTGCCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTT 4793 Query 131058 GTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTG 131117 ||| ||| || |||||| |||||| ||||||||||| || |||| | |||||||| Sbjct 4794 GTAGTCGGCCAGGGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTG 4853 Query 131118 GTCCGGAGGGATTCCT 131133 |||||||||||| ||| Sbjct 4854 GTCCGGAGGGATGCCT 4869 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| |||||||| || || | || |||||||| || |||||||| || | Sbjct 6252 CCACCGCGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 6311 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||||||||| |||| | |||||||||||||||||| Sbjct 6312 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 6371 Query 131128 ATTCCT 131133 || ||| Sbjct 6372 ATGCCT 6377 Score = 113 bits (124), Expect = 4e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| || || | || |||||||| ||||||||||| || Sbjct 5242 GCCACCGCGCAGGCGCAGCACCAAGTGCAGCGTTGACTCCTTCTGAATGTTGTAGTCAGC 5301 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 5302 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGGGG 5361 Query 131127 GATTCCT 131133 ||| ||| Sbjct 5362 GATCCCT 5368 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | || |||||||| || |||||||||||| Sbjct 5752 GCCACCGCGCAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 5811 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| || |||| | |||||||||||||| || Sbjct 5812 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGGGG 5871 Query 131127 GATTCCT 131133 || ||| Sbjct 5872 AATGCCT 5878 >seq1439 Length=14137 Score = 113 bits (124), Expect = 4e-20 Identities = 105/132 (80%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| ||||||| |||||||| | || | |||||||||||| || |||||||| Sbjct 3014 ATGATGCCGCCGCGCAGGCGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAG 2955 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| || |||||| |||||| ||||||||||| || |||| | |||||||||||| Sbjct 2954 TCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCC 2895 Query 131122 GGAGGGATTCCT 131133 || ||||| ||| Sbjct 2894 GGGGGGATGCCT 2883 >seq3912 Length=5383 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCG 145684 ||||||||||||| || || || || ||||| |||| | || |||| | || |||||| Sbjct 116 GCGATCGACGCCAGGTTGCACACCGCGGTCTCGTCGGGGGCGGTGTACTCCACAATCTCG 175 Query 145685 GCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC 145744 | ||||| ||| || |||||||| ||||| || |||||||| || || | ||||||| Sbjct 176 GTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTGCGGTTGCAC 235 Query 145745 GCGTCCT 145751 | ||||| Sbjct 236 GAGTCCT 242 >seq6716 Length=19574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 46134 CAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCttttt 46193 |||| | | || ||||||||||| ||||||||| || || |||||| |||| || Sbjct 10705 CAGCTCTGAGAGCTTCGCCGAGCGGCTGGTGGCCTACGCCGCAGTCGAGGGCATCTTCTT 10646 Query 46194 ttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGAC 46253 ||||| || ||||||||||| |||| | ||| ||||||| ||||| || Sbjct 10645 CAGCGGCAGCTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCAC 10586 Query 46254 GTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTG 46303 ||| ||||||||| || || |||||||||||||| || ||||||| Sbjct 10585 CTTTTCCAACGAGCTCATCAGCCGTGACGAGGGCCTGCACACCGACTTTG 10536 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 ||||||||||| | ||||||| || |||||||||| || | ||| ||||| || Sbjct 5514 TTCGCCGAGCGGCTTGTGGCCTACACGGCTGTGGAGGGCATCCTCTTTAGCGGCAGCTTC 5455 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 ||||||||| | |||| | ||| ||||||| ||||| || || ||||||| Sbjct 5454 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 5395 Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTG 46303 || || || |||||||||||||| || ||||||| Sbjct 5394 CTCATCAGCCGTGACGAGGGCCTGCACACCGACTTTG 5358 >seq1025 Length=17526 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 46133 GCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttt 46192 ||||| ||| | || || |||| || |||| |||||| || |||||| || | Sbjct 16590 GCAGCGGGGCGCCCTTTGCGCAGCGGCTGCTGGCGTTTGCGTGCGTCGAGGGCATCCACT 16531 Query 46193 tttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGA 46252 | ||||| || |||||| |||| ||||| | ||| ||||||| || || | Sbjct 16530 TCAGCGGCAGCTTCTGCGCCATATTTTGGATCAAGAAGCGTGGCCTCATGCCAGGGCTCA 16471 Query 46253 CGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTC 46311 |||| ||||||||||| || || |||||||| ||||| || |||||||| || ||| Sbjct 16470 CGTTCAGCAACGAGCTCATCAGCCGGGACGAGGGGCTGCACACAGACTTTGCCTGCCTC 16412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471973150924800