Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6716 134 3e-26 seq2517 127 4e-24 seq3912 120 6e-22 seq1025 111 3e-19 seq2535 86.0 1e-11 >seq6716 Length=19574 Score = 134 bits (148), Expect = 3e-26 Identities = 132/168 (79%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| |||| ||||||| |||| |||| |||||||||||||||||| ||| |||| Sbjct 10692 TTCGCCGAGCGGCTGGTGGCCTACGCCGCAGTCGAGGGCATCTTCTTCAGCGGCAGCTTC 10633 Query 42753 GCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 | ||||||| ||||||||| || || || ||||| || |||||||| || ||||| Sbjct 10632 TGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC-ATGCCGGGCCTCACCTTTTCCAACGA 10574 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 ||||||||| | |||||||| ||||| | ||||||| |||||| || Sbjct 10573 GCTCATCAGCCGTGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCT 10526 Score = 125 bits (138), Expect = 1e-23 Identities = 130/168 (77%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| |||| |||| || |||| || || || ||||||||| |||| ||| |||| Sbjct 5514 TTCGCCGAGCGGCTTGTGGCCTACACGGCTGTGGAGGGCATCCTCTTTAGCGGCAGCTTC 5455 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 | ||||||||||||||||| || || || ||||| || ||||||||||| ||||| Sbjct 5454 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCGGGCCTCACCTTCTCCAACGA 5396 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 ||||||||| | |||||||| ||||| | ||||||| |||||| || Sbjct 5395 GCTCATCAGCCGTGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCT 5348 >seq2517 Length=9782 Score = 127 bits (140), Expect = 4e-24 Identities = 127/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| | || || |||| |||| |||||||||||||||||| ||| |||| | || Sbjct 4481 GAGCGCCTTGTGGCCTACGCCGCGGTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGCGCC 4540 Query 42759 ATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || || || ||||| || ||||||||||| ||||| ||||| Sbjct 4541 ATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCAT 4599 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 |||| | |||||||| ||||| | ||||||| |||||| || Sbjct 4600 CAGCCGCGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCT 4641 >seq3912 Length=5383 Score = 120 bits (132), Expect = 6e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 245187 CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGT 245246 ||||||| | |||||| | ||||| |||||||| ||| ||||||||||| ||||| Sbjct 1357 CGTTGAACACGCGCAGCATGGGCACGATGCCGTTGGAGGTTCCGTTGGTGCCGCGGATGT 1416 Query 245247 AGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGA 245306 ||| |||| || | | || |||| ||| |||| ||| | ||||||||| |||||||| Sbjct 1417 AGGAGCCCGTGGCGCGGATGTTGTGGATCGACACGCCGATGCCGCCGGCGCTCTTGGAGA 1476 Query 245307 TGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTG 245350 ||| |||||| ||| | |||||| |||||||| |||||| Sbjct 1477 TGACGGCGCACTCCTTCAGGGTGTCGTAGATGCCCTCGATGCTG 1520 Score = 105 bits (116), Expect = 1e-17 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 ||||||||||| || || ||| || | | |||||||| |||||||||||||| ||| Sbjct 125 GCCAGGTTGCACACCGCGGTCTCGTCGGGGGCGGTGTACTCCACAATCTCGGTGCACAGG 184 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 || |||||||||||||||||||| ||| |||||| |||| |||||| | ||||| Sbjct 185 TTGGAGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTGCGGTTGCACGAGTCCT 242 Score = 104 bits (114), Expect = 4e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||||||||||||| |||||||||||| | || ||||| | | | | ||| ||| Sbjct 944 CATGAAGAGGTCGTTGATCCAGAGGGCGTAAAACAGGTCACGCGCGCGCGCCTCCTCCTT 1003 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || |||||| | |||||| | |||||||| ||||| ||||||||||||||| ||| Sbjct 1004 CCCGTGGTTCTTGCGCAGCTCGATGAAGTCAAACACGTCCGCGTGCCAGGGCTCCAGGTA 1063 Query 245131 GACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 || || | ||||| |||||| ||| ||||||||||| Sbjct 1064 GATCGCAAACGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 1105 >seq1025 Length=17526 Score = 111 bits (122), Expect = 3e-19 Identities = 124/163 (76%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || ||||| | || ||| | ||||||||||||| |||| ||| |||| | ||| Sbjct 16569 AGCGGCTGCTGGCGTTTGCGTGCGTCGAGGGCATCCACTTCAGCGGCAGCTTCTGCGCCA 16510 Query 42760 TCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 | || ||| ||||| || || || ||||| || ||||| ||| ||||| |||||| Sbjct 16509 TATTTTGGATCAAGAAGCGTGGCCTC-ATGCCAGGGCTCACGTTCAGCAACGAGCTCATC 16451 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 ||| |||||||||||||||| | ||||||||||||||||||| Sbjct 16450 AGCCGGGACGAGGGGCTGCACACAGACTTTGCCTGCCTCCTGT 16408 >seq2535 Length=8865 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 |||||| || ||||| ||| ||||| ||||||||| |||||||||||||||| | || Sbjct 419 GATGCCGGGGCTCACGTTCAGCAACGAGCTCATCAGCCGGGACGAGGGGCTGCACACAGA 360 Query 42845 CTTTGCCTGCCTCCTGT 42861 ||| ||||||||||||| Sbjct 359 CTTCGCCTGCCTCCTGT 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944259875507200