Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq664 96.9 4e-15 seq1025 84.2 3e-11 seq6716 82.4 9e-11 >seq664 Length=23666 Score = 96.9 bits (106), Expect = 4e-15 Identities = 203/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 10853 ACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTT 10912 |||| || |||||| | | ||||||||||||||||| |||| || || ||||| || Sbjct 6681 ACAATGACGCCCGTGTTGCCCTCAAAGCCATCCATCTCTGTCAGCAGCTGGTTGATCGTC 6622 Query 10913 TGTTCGCGTTCATCATTCGCGGGCATACCACCCGC-ACTGCGTTGCTTACCGACGGCGTC 10971 || ||||| || || || || | || | |||| | ||| || || ||||| || Sbjct 6621 TGCTCGCGCTCGTCGTT-GCCGCCACCCATGCCGCTGCCGCGCTGGCGGCCCACGGCATC 6563 Query 10972 AATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCG 11031 || || |||||||| | ||| || ||| || | ||| ||||| | || || Sbjct 6562 GATCTCGTCGATGAAGATGATGCAGGGTGCCTTGGCCTTGGCCTTCTCAAACAGGTCGCG 6503 Query 11032 GACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGAT 11091 || | |||| || || || ||||||| |||||||| | | ||||| || || Sbjct 6502 CACGCGGCTGGCGCCCACGCCGACAAACAGCTCCACAAACTCAGAGGCGGCGCAGGAGAA 6443 Query 11092 GAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 ||||||| | | ||||| || | ||| ||| ||||||||||| || || ||||| Sbjct 6442 GAAGGGGGTGCCAGCCTCACCAGCCACGGCCTTGGCCAGGAGGGTCTTGCCGGTACCAGG 6383 >seq1025 Length=17526 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| ||| ||| || |||||||| ||| |||||| || || ||| || || Sbjct 16418 GGCAAAGTCTGTGTGCAGCCCCTCGTCCCGGCTGATGAGCTCGTTGCTGAACGTGAGCCC 16477 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||| || |||||||| | ||| || || || || || || |||| ||| Sbjct 16478 TGGCATGAGGCCACGCTTCTTGATCCAAAATATGGCGCAGAAGCTGCCGCTGAAGTGGAT 16537 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGC 126211 ||||| || ||||| ||||| | || |||| ||||||| |||| Sbjct 16538 GCCCTCGACGCACGCAAACGCCAGCAGCCGCTGCGCAAAGG-GCGC 16582 >seq6716 Length=19574 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||||||| |||||| || || |||||| || || |||||||| || Sbjct 5368 GTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 5427 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || || || |||| ||| ||||||||| Sbjct 5428 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGCTAAAGAGGATGCCCTCCACAGC 5487 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || | | || | || ||||| || ||| Sbjct 5488 CGTGTAGGCCACAAGCCGCTCGGCGAAG 5515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597303422297600