Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3912 118 1e-21 >seq3912 Length=5383 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 94142 GCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCT 94201 |||||||||||||||| || || | | | ||||| | || ||| |||| || ||||||| Sbjct 1110 GCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCGTTTGCGATCTACCTGGAGCCCT 1051 Query 94202 GGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA 94261 |||||||||||||| | |||||||| ||||| ||||||||||| || || || | Sbjct 1050 GGCACGCGGACGTGTTTGACTTCATCGAGCTGCGCAAGAACCACGGGAAGGAGGAGGCGC 991 Query 94262 GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | ||||| || ||||| |||||| | ||||| || |||| Sbjct 990 GCGCGCGTGACCTGTTTTACGCCCTCTGGATCAACGACCTCTTCATGA 943 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || || | ||||| ||| ||||| || || |||||| || ||| || || ||||| Sbjct 1510 GGCATCTACGACACCCTGAAGGAGTGCGCCGTCATCTCCAAGAGCGCCGGCGGCATCGGC 1451 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 | ||||| || | || |||| ||| |||||||||||||| ||||| || |||||| Sbjct 1450 GTGTCGATCCACAACATCCGCGCCACGGGCTCCTACATCCGCGGCACCAACGGAACCTCC 1391 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCG 94142 |||||| |||| || ||||| || || |||||| || | ||||| Sbjct 1390 AACGGCATCGTGCCCATGCTGCGCGTGTTCAACGACACCGCGCG 1347 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 94514 AGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATC 94573 ||||||| |||| |||| ||| |||||| |||| || |||||| |||| || | Sbjct 242 AGGACTCGTGCAACCGCAAGAGCAATCAGCAGAACCTGGGCACCATCAAGTGCTCCAACC 183 Query 94574 TGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCT 94633 |||||||||||||||| ||||| || | || ||||||| || ||||| ||||||| | Sbjct 182 TGTGCACCGAGATTGTGGAGTACACCGCCCCCGACGAGACCGCGGTGTGCAACCTGGCGT 123 Query 94634 CCATC 94638 | ||| Sbjct 122 CGATC 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494681643251200