Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq34 105 7e-18 seq3976 96.9 4e-15 >seq34 Length=54534 Score = 105 bits (116), Expect = 7e-18 Identities = 178/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 152928 CTCGCCCAAGAGGAAGCGCGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTG 152987 |||||||| ||||| || |||| |||| ||| | | ||||| ||||| | || Sbjct 33722 CTCGCCCAGGAGGAGGCTCGCAGGCTCGGCCACAACTTTGTAGGCACTGAGCAGATTCTT 33781 Query 152988 CTCGGGCTGGTCCACGAGGGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATC 153047 || || ||| || |||| | |||| | || ||||||| |||| || | | | || Sbjct 33782 CTTGGCCTGATCGGCGAGTCCACGGGCATCGCTGCCAAGGTGCTGAAGAGCATGGGCGTC 33841 Query 153048 AACCTGGAGGAGGTGCGTGCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCC 153107 || ||| |||| | || | ||||||||| |||| |||||| ||| ||||| | Sbjct 33842 AATCTGAAGGACGCCCGCGTGGAGGTCGAGAAGATTATCGGCAGGGGCT--CAGGCTTCG 33899 Query 153108 A--CCGGGCACATCCCGTTCACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCG 153165 | | | | ||||||||||| ||| |||||||||| ||||||||||| ||| | Sbjct 33900 TGGCAGTGGAGATCCCGTTCACGCCGCGCGCCAAGCGCGTGCTGGAGCTGTCTCTGGAGG 33959 Query 153166 AGGCGCTGCAGCTCGG 153181 |||||| |||||| || Sbjct 33960 AGGCGCGGCAGCTGGG 33975 >seq3976 Length=5282 Score = 96.9 bits (106), Expect = 4e-15 Identities = 90/112 (80%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 153180 GGCCACAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGC 153239 |||||||||||||||||||||||||| ||||||||| |||| | |||||||| |||||| Sbjct 3455 GGCCACAACTACATCGGCACCGAGCACATCCTGCTGGGCCTGCTGCGCGAGGGCGAGGGC 3514 Query 153240 GTGGGCTGC-CAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGC 153290 || || || | ||||||| || | |||||||| | ||||| ||||| Sbjct 3515 GT-CGCGGCGCGCGTGCTGGAGACCCTGGGCGCGGACCCCTCCAAGATCCGC 3565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526554165734400