Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3912 104 2e-17 seq6716 98.7 1e-15 seq1025 82.4 8e-11 >seq3912 Length=5383 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 || || |||||||| || || || || ||||| |||| | || |||||| ||| |||||| Sbjct 116 GCGATCGACGCCAGGTTGCACACCGCGGTCTCGTCGGGGGCGGTGTACTCCACAATCTCG 175 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | ||| |||||| ||| || ||| ||||| || ||||||||||| ||||| |||||| Sbjct 176 GTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTGCGGTTGCAC 235 Query 153717 GCGTC 153721 | ||| Sbjct 236 GAGTC 240 >seq6716 Length=19574 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 |||||||| ||||||||| |||| |||||||||| | || || ||||||||| | Sbjct 10689 GCCGAGCGGCTGGTGGCCTACGCCGCAGTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGC 10630 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 |||||||||| | || | | ||| | ||||| ||||| || || ||||||| | Sbjct 10629 GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGAGCTC 10570 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACA 52560 || || ||||| || |||||||| ||||||| ||||| ||||| Sbjct 10569 ATCAGCCGTGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCTCTACA 10521 >seq1025 Length=17526 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCA 52455 |||| || |||| || || ||||||||| | || ||||||||| ||||| Sbjct 16569 AGCGGCTGCTGGCGTTTGCGTGCGTCGAGGGCATCCACTTCAGCGGCAGCTTCTGCGCCA 16510 Query 52456 TCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATAT 52515 | |||| || || | | ||| | ||||| || || ||||||||||||||| | || Sbjct 16509 TATTTTGGATCAAGAAGCGTGGCCTCATGCCAGGGCTCACGTTCAGCAACGAGCTCATCA 16450 Query 52516 CGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553 || ||||| || |||||||| |||||||| |||||| Sbjct 16449 GCCGGGACGAGGGGCTGCACACAGACTTTGCCTGCCTC 16412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496220713958400