Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6716 84.2 2e-11 seq1025 82.4 7e-11 >seq6716 Length=19574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGC 47191 ||||| || || | || | |||| ||||||||| |||||||| |||||||| ||| Sbjct 10689 GCCGAGCGGCTGGTGGCCTACGCCGCAGTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGC 10630 Query 47192 GGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCT 47251 | | || |||| | || | || | ||||| |||||||| ||| ||||||||| Sbjct 10629 GCC-ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGAGCT 10571 Query 47252 AATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACA 47301 ||| | ||||| |||||||||||| |||||| ||| || ||||| Sbjct 10570 CATCAGCCGTGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCTCTACA 10521 >seq1025 Length=17526 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 47159 CGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTTTACATGAAAACCAAAG 47217 |||||||||| || |||| |||||||| |||| | ||||||| || || | | Sbjct 16547 CGTCGAGGGCATCCACTTCAGCGGCAGCTTCTGCGCC-ATATTTTGGATCAAGAAGCGTG 16489 Query 47218 GAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACA 47277 | | ||||| || |||||||| ||||||||||| ||| | ||||| || ||||||| Sbjct 16488 GCCTCATGCCAGGGCTCACGTTCAGCAACGAGCTCATCAGCCGGGACGAGGGGCTGCACA 16429 Query 47278 CCAACTTTGCCTGTCTC 47294 | |||||||||| ||| Sbjct 16428 CAGACTTTGCCTGCCTC 16412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475460857932800