Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq6720 778 0.0 >seq6720 Length=135362 Score = 778 bits (862), Expect = 0.0 Identities = 801/1041 (77%), Gaps = 10/1041 (1%) Strand=Plus/Plus Query 7533 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAA 7592 ||| ||| | ||| | |||||||||||||| ||||| |||||||| |||||||| || | Sbjct 36407 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 36466 Query 7593 GACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGA 7652 ||||||||||| | ||| ||||| ||||| | ||||||||||| ||||| | Sbjct 36467 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 36526 Query 7653 TGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCAT-GGTGCTAACACCAAGAGCA 7711 || |||||||||||||| ||||| | |||||||||||| | || ||| ||| | |||| Sbjct 36527 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCA 36585 Query 7712 GTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTG 7771 |||||||| |||| | || ||||| || || | ||||||||| | ||||| |||||| Sbjct 36586 GTGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTG 36645 Query 7772 TTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTG 7831 ||||| || |||||||||||||| | |||||||||||| ||||| ||||| ||||||||| Sbjct 36646 TTGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTG 36705 Query 7832 TAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTT 7891 || ||||||||||||||||| || || ||||| | ||| || || ||||| ||| Sbjct 36706 TAAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTT 36765 Query 7892 TCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCA 7951 ||||| | | || || ||||| | ||||| ||||| || ||| | ||||||||| Sbjct 36766 TCACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCA 36825 Query 7952 AAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGG 8011 || |||||||| || || | ||||||||| |||||||| | ||||||||||| |||||| Sbjct 36826 AATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGG 36885 Query 8012 AAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAA 8071 || || | |||| ||||||| ||||||||||| || | ||||||| | |||||||||||| Sbjct 36886 AATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAA 36945 Query 8072 CCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTAT 8131 ||||| |||| || |||| | |||||| |||| ||| ||||| |||||||| ||||| Sbjct 36946 CCTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAA 37005 Query 8132 GCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATG 8191 || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 37006 GCAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATG 37065 Query 8192 T---ATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTG 8248 | ||||| | ||| | | ||||||| | | | | |||| |||||||||||||| Sbjct 37066 TAAGATGCA---ACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTG 37122 Query 8249 TAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCG 8308 || | |||||| || | |||||| |||||||| || || |||||||| ||||| || ||| Sbjct 37123 TATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCG 37182 Query 8309 TTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCG 8368 ||||| | ||| | || ||||||||||||||||||||| || || | | ||||||| Sbjct 37183 TTAGATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAA 37242 Query 8369 ACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA- 8427 || || |||||||| || || || || || |||||||| |||| ||| ||| ||||| Sbjct 37243 ACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAAT 37302 Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487 ||| || | ||| | | | ||| ||||| | |||||||||||||||| || | Sbjct 37303 ACAGAT-GTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAA 37361 Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAATTGTTCCCAGGTGTTAGTAGAACGTTG 8547 ||| || | || || || | ||| | ||| || | |||| | ||| || || | Sbjct 37362 ACGGTTTTCAGTTGAAGTGATCCACTCACAAAAACGAGCCCAAAGGCTAGAAGTACCACG 37421 Query 8548 TTGTGAAAGAGTTGCAGTCAT 8568 | ||||||| |||||||| Sbjct 37422 GTTTGAAAGAACAGCAGTCAT 37442 Score = 778 bits (862), Expect = 0.0 Identities = 801/1041 (77%), Gaps = 10/1041 (1%) Strand=Plus/Minus Query 7533 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAA 7592 ||| ||| | ||| | |||||||||||||| ||||| |||||||| |||||||| || | Sbjct 109241 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 109182 Query 7593 GACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGA 7652 ||||||||||| | ||| ||||| ||||| | ||||||||||| ||||| | Sbjct 109181 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 109122 Query 7653 TGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGT-GCTAACACCAAGAGCA 7711 || |||||||||||||| ||||| | |||||||||||| || | ||| ||| | |||| Sbjct 109121 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCA 109063 Query 7712 GTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTG 7771 |||||||| |||| | || ||||| || || | ||||||||| | ||||| |||||| Sbjct 109062 GTGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTG 109003 Query 7772 TTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTG 7831 ||||| || |||||||||||||| | |||||||||||| ||||| ||||| ||||||||| Sbjct 109002 TTGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTG 108943 Query 7832 TAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTT 7891 || ||||||||||||||||| || || ||||| | ||| || || ||||| ||| Sbjct 108942 TAAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTT 108883 Query 7892 TCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCA 7951 ||||| | | || || ||||| | ||||| ||||| || ||| | ||||||||| Sbjct 108882 TCACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCA 108823 Query 7952 AAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGG 8011 || |||||||| || || | ||||||||| |||||||| | ||||||||||| |||||| Sbjct 108822 AATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGG 108763 Query 8012 AAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAA 8071 || || | |||| ||||||| ||||||||||| || | ||||||| | |||||||||||| Sbjct 108762 AATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAA 108703 Query 8072 CCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTAT 8131 ||||| |||| || |||| | |||||| |||| ||| ||||| |||||||| ||||| Sbjct 108702 CCTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAA 108643 Query 8132 GCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATG 8191 || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 108642 GCAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATG 108583 Query 8192 TA---TGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTG 8248 || |||| | ||| | | ||||||| | | | | |||| |||||||||||||| Sbjct 108582 TAAGATGCA---ACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTG 108526 Query 8249 TAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCG 8308 || | |||||| || | |||||| |||||||| || || |||||||| ||||| || ||| Sbjct 108525 TATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCG 108466 Query 8309 TTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCG 8368 ||||| | ||| | || ||||||||||||||||||||| || || | | ||||||| Sbjct 108465 TTAGATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAA 108406 Query 8369 ACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA- 8427 || || |||||||| || || || || || |||||||| |||| ||| ||| ||||| Sbjct 108405 ACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAAT 108346 Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487 ||| || | ||| | | | ||| ||||| | |||||||||||||||| || | Sbjct 108345 ACAGAT-GTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAA 108287 Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAATTGTTCCCAGGTGTTAGTAGAACGTTG 8547 ||| || | || || || | ||| | ||| || | |||| | ||| || || | Sbjct 108286 ACGGTTTTCAGTTGAAGTGATCCACTCACAAAAACGAGCCCAAAGGCTAGAAGTACCACG 108227 Query 8548 TTGTGAAAGAGTTGCAGTCAT 8568 | ||||||| |||||||| Sbjct 108226 GTTTGAAAGAACAGCAGTCAT 108206 Score = 549 bits (608), Expect = 2e-151 Identities = 727/1005 (72%), Gaps = 8/1005 (1%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || ||||||||||| || ||||| ||| ||| ||||| || || Sbjct 122714 AGAGCGTTACCACGAGGTAATACTTCTTCTGGGAATACTAAGCGTTCGTGTGGCTGGTCT 122655 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 || |||||||| ||||| | ||||||||| | || | ||| || || ||||| || Sbjct 122654 TGTGCAGCCATCCAAGCACGGATACCTTCATTAAGAAGAAGGTTTTTAGTGTAGAAAGTT 122595 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || |||||||| || || || | |||||||||||||| ||||| ||||| | | | Sbjct 122594 TCAAATTCTGGATCTTCAGCAGCACGAATCTCTTGTGAAACGAAGTCGTAAGCACGTAAG 122535 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 ||||| || | ||| | || |||||| ||| |||||||||| | ||||||||||| Sbjct 122534 TTAAGAGCTAAACCTACAACACCAATAGCAGACATCCAAAGACCTGTCACAGGAACAAAT 122475 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | ||||||||| |||| |||||| || || || || | |||||| || || |||||| Sbjct 122474 AACATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGACCAG 122415 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || | |||||| || ||||| || || || || || |||| ||||| | ||| || | Sbjct 122414 AATCTATTAGCTGTTACCATAGAGTAAGTTTCTTCAGCTTGCGTAGGGTTAAATGCACGG 122355 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || || || | ||||||||||| || | |||||| ||||| |||||||| |||||| Sbjct 122354 AATGTGTTAGCACCATCACCATCTTCGAAAAGAGTATTTTCTACTGTAGCACCATGAATA 122295 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 ||||| | | || ||||||| | ||| || || |||||||| || || ||||| || Sbjct 122294 GCACATAATAGAGCCGCACCTAAAACACCAGCAACTCCCATCATGTGGAATGGGTTAAGT 122235 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGA---AGCGGAATATCGCTGCAACACCA 6799 |||||||||||||| || || ||||| ||||| | ||||| || || ||||||||| Sbjct 122234 GTCCAGTTGTGGAAACCTTG---GAAGAATAAGATAAAACGGAAAATAGCGGCAACACCA 122178 Query 6800 AACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACA 6859 || || || |||||||||| || || || | ||| || || | ||| ||||| ||| Sbjct 122177 AAACTAGGGGCGAAGAACCAACCAGATTGACCTAAAGGGTAAATTAAAAATACAGAAACA 122118 Query 6860 AAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGT 6919 || |||||||| || |||| || || ||||| || || ||||| | ||| |||| Sbjct 122117 AATACAGCAATTGGTGCAGAGAAAGCAATTGCGTTATATGGACGTAAGTTTACTGAACGT 122058 Query 6920 GCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACA 6979 || || ||||| || || | ||| ||||| || | |||| || || || || || ||| Sbjct 122057 GCAATTTCAAATTGACGTAACATAAAACCAATTAAACCAAAAGCACCATGCAGTGCTACA 121998 Query 6980 AAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCC 7039 |||| ||||| || || | ||| ||| || || || || |||||||| || ||| Sbjct 121997 AAAGTCCATAAACCACCTAATTGACACCAACGTGTAAAGTCACCTTGAGCTTCAGGTCCC 121938 Query 7040 CATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGG 7099 || | || | || ||||| | | | || || ||||| || || |||||||| | | Sbjct 121937 CAAATAAATAATAAAGAATGAGCCATACTGTTTGCTGGAGTCGAAACTGCAGCAGTTAAG 121878 Query 7100 AAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAA 7159 || ||||| || || | || |||| || | || || |||||||| || || || Sbjct 121877 AAGTTACAACCTTCTAAGTAAGAAGTTGCTAAACCATGTGTGTACCAAGAAGTAACAAAT 121818 Query 7160 GTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCT 7219 ||||| || || | |||||| || | ||| | || ||| ||| || | |||||||||| Sbjct 121817 GTTGTCCCAGTAAACCAACCACCTAATGCAAAATACGCACAAGGTAATAAAAGAAGACCT 121758 Query 7220 GACCAACCAACAAAAACGAACCTATCACG-CTTAAGCCAGTCATC 7263 |||||||| |||||||| || | || | | ||| ||||||||| Sbjct 121757 GACCAACCTACAAAAACAAAACGGTCTTGACGTAA-CCAGTCATC 121714 Score = 91.5 bits (100), Expect = 2e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 176313 TAGGAGACTCGAACTCCTGACAGCCTGCTTGCAAAGCAGGTGCTCTACCAACTGAGCTAA 176372 ||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 40329 TAGGAGAGTCGAACTCCTGACCCCCTGCGTGCAAAGCAGGTGCTCTACCAACTGAGCTAA 40270 Score = 91.5 bits (100), Expect = 2e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 176313 TAGGAGACTCGAACTCCTGACAGCCTGCTTGCAAAGCAGGTGCTCTACCAACTGAGCTAA 176372 ||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 105319 TAGGAGAGTCGAACTCCTGACCCCCTGCGTGCAAAGCAGGTGCTCTACCAACTGAGCTAA 105378 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 176133 GGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCATTAACCACTCG 176192 ||||| ||||| ||||||| |||||||||||||||| |||||| |||||||||||||| Sbjct 113659 GGATTCGAACCAACGTAGGCGTAGCCAGCGGATTTACAATCCGCCCCCATTAACCACTCG 113600 Query 176193 GACACCTACCCT 176204 | || | ||||| Sbjct 113599 GGCATCGACCCT 113588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622072541516800