Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq664 93.3 5e-14 seq6716 91.5 2e-13 seq1025 86.0 8e-12 seq172 86.0 8e-12 >seq664 Length=23666 Score = 93.3 bits (102), Expect = 5e-14 Identities = 202/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 12768 ACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTT 12827 |||| || |||||| | | || |||||||||||||| |||| || || ||||| || Sbjct 6681 ACAATGACGCCCGTGTTGCCCTCAAAGCCATCCATCTCTGTCAGCAGCTGGTTGATCGTC 6622 Query 12828 TGTTCACGTTCATCATTCGCGGGCATACCACCCGCA-CTGCGTTGCTTACCGACGGCGTC 12886 || || || || || || || | || | |||| | ||| || || ||||| || Sbjct 6621 TGCTCGCGCTCGTCGTT-GCCGCCACCCATGCCGCTGCCGCGCTGGCGGCCCACGGCATC 6563 Query 12887 AATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCG 12946 || ||||| ||||| | ||| || ||| || | ||| ||||| | || || Sbjct 6562 GATCTCGTCGATGAAGATGATGCAGGGTGCCTTGGCCTTGGCCTTCTCAAACAGGTCGCG 6503 Query 12947 CACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGAT 13006 ||| | |||| || || || ||||||| ||||||||| | | ||||| || || Sbjct 6502 CACGCGGCTGGCGCCCACGCCGACAAACAGCTCCACAAACTCAGAGGCGGCGCAGGAGAA 6443 Query 13007 GAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 ||||||| | | ||||| || | ||| ||| ||||||||||| || || || || Sbjct 6442 GAAGGGGGTGCCAGCCTCACCAGCCACGGCCTTGGCCAGGAGGGTCTTGCCGGTACCAGG 6383 >seq6716 Length=19574 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||||||| |||||| || || |||||| || || |||||||| || Sbjct 5368 GTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 5427 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || ||| |||| ||| ||||||||| Sbjct 5428 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGCTAAAGAGGATGCCCTCCACAGC 5487 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAG 127678 || | | || | || |||||||| ||| Sbjct 5488 CGTGTAGGCCACAAGCCGCTCGGCGAAG 5515 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||||||| |||||| || || || ||| || || |||||||| || Sbjct 10546 GTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCC 10605 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | ||| || || || || || ||| ||||||||| ||||| || Sbjct 10606 GCGCTTCTTGAGCCAAAAGATGGCGCAGAAGCTGCCGCTGAAGAAGATGCCCTCGACTGC 10665 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||| | || | || |||||||| ||| Sbjct 10666 GGCGTAGGCCACCAGCCGCTCGGCGAAG 10693 >seq1025 Length=17526 Score = 86.0 bits (94), Expect = 8e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| ||| ||| || |||||||| ||| |||||| || || ||| || ||| Sbjct 16419 GCAAAGTCTGTGTGCAGCCCCTCGTCCCGGCTGATGAGCTCGTTGCTGAACGTGAGCCCT 16478 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | ||| || || || || || ||| |||| ||| Sbjct 16479 GGCATGAGGCCACGCTTCTTGATCCAAAATATGGCGCAGAAGCTGCCGCTGAAGTGGATG 16538 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| || ||||| ||||| | || |||| ||||||| Sbjct 16539 CCCTCGACGCACGCAAACGCCAGCAGCCGCTGCGCAAAGG 16578 >seq172 Length=37706 Score = 86.0 bits (94), Expect = 8e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 12957 GCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGAC 13015 ||||| ||||||||||||||||||||||| | || | ||| | || | || |||||| || Sbjct 4841 GCACCCACACCCACAAACATCTCCACAAACTCGGAGCCGG-AGATGGAGAAGAAGGGCAC 4783 Query 13016 GTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || || || |||||||| |||||| |||||||| ||||| || || Sbjct 4782 GCCGGCCTCGCCGGCGATGGCCTTGGCGAGCAGGGTCTTACCCGTGCCGGG 4732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613455665395200