Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6716 123 4e-23 seq2517 114 2e-20 seq1025 111 3e-19 >seq6716 Length=19574 Score = 123 bits (136), Expect = 4e-23 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || ||||| |||||||| |||||| |||||||| || ||||| ||||||||| | | Sbjct 5348 AGCAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGAGAAG 5407 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCT 160035 ||||||||||||||| || ||| |||||||| || |||| |||| |||| ||||| Sbjct 5408 GTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTGCCGCT 5466 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 ||| | ||| |||||||| |||| | ||||| |||| ||| Sbjct 5467 AAAGAGGATGCCCTCCACAGCCGTGTAGGCCACAAGCCGCTC 5508 Score = 123 bits (136), Expect = 4e-23 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || ||||| |||||||| |||||| |||||||| || ||||| ||||||||| | | Sbjct 10526 AGCAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGAAAAG 10585 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCT 160035 ||||||||||||||| || ||| ||||||||||| |||| |||| |||| ||||| Sbjct 10586 GTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAGCTGCCGCT 10644 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 || ||||| ||||| || || || | ||||| |||| ||| Sbjct 10645 GAAGAAGATGCCCTCGACTGCGGCGTAGGCCACCAGCCGCTC 10686 >seq2517 Length=9782 Score = 114 bits (126), Expect = 2e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || ||||| |||||||| |||||| |||||||| || ||||| ||||||||| | | Sbjct 4641 AGCAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAG 4582 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCT 160035 ||||||||||||||| || ||| |||||||| || |||| |||| |||| ||||| Sbjct 4581 GTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTGCCGCT 4523 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 || ||||| ||||| || || || | ||||| || | ||| Sbjct 4522 GAAGAAGATGCCCTCGACCGCGGCGTAGGCCACAAGGCGCTC 4481 >seq1025 Length=17526 Score = 111 bits (122), Expect = 3e-19 Identities = 124/163 (76%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||||||||| |||||||| |||||| ||||||||||| ||||| ||||||| | Sbjct 16408 ACAGGAGGCAGGCAAAGTCTGTGTGCAGCCCCTCGTCCCGGCTGATGAGCTCGTTGCTGA 16467 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCG 160033 |||| || ||||||| |||||| |||| |||||| |||| |||| |||| ||| Sbjct 16468 ACGTGAGCCCTGGCATGAGGCCACGCTTCTTGATCCAAAATATGG-CGCAGAAGCTGCCG 16526 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCT 160076 || || ||| ||||| ||| ||||||||||| |||| || Sbjct 16527 CTGAAGTGGATGCCCTCGACGCACGCAAACGCCAGCAGCCGCT 16569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795088406963200