Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1067 96.9 4e-15 seq2396 93.3 5e-14 seq1439 93.3 5e-14 seq2272 87.8 2e-12 >seq1067 Length=17102 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| |||||||||||||||| || ||||| || Sbjct 12196 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCG 12137 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| ||||| |||| |||||||||||| Sbjct 12136 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 12096 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| |||||||||| || ||||| || Sbjct 10730 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 10671 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| ||||| |||| |||||||||||| Sbjct 10670 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 10630 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| ||||| |||| || ||||| || Sbjct 10201 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGGCCG 10142 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| ||||| |||| |||||||||||| Sbjct 10141 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 10101 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| |||||||||| || ||||| | Sbjct 11204 CGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 11145 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| ||||| |||| |||||||||||| Sbjct 11144 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 11104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| || || |||||||||| |||||||| | Sbjct 11659 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCA 11600 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| ||||| |||| |||||||||||| Sbjct 11599 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 11559 >seq2396 Length=9575 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 53 CGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCG 112 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||||||||| |||| ||||||||||| Sbjct 113 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 153 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||||| || ||||| || Sbjct 567 CGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 626 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || |||||||||||||| || |||| ||||||||||| Sbjct 627 TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTC 667 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||||| || ||||| || Sbjct 1025 CGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 1084 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || |||||||||||||| || |||| ||||||||||| Sbjct 1085 TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTC 1125 >seq1439 Length=14137 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| |||||||||| || ||||| || Sbjct 2996 CGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 2937 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || |||||||||||||| || |||| |||||||||||| Sbjct 2936 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 2896 >seq2272 Length=9786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| |||||||||| || ||||| || Sbjct 4756 CGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCG 4815 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| || || |||| |||||||||||| Sbjct 4816 TCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 4856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| ||||| |||| || ||||| || Sbjct 5765 CGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGGCCG 5824 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| || || |||| |||||||||||| Sbjct 5825 TCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 5865 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 6264 CGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCG 6323 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| || || |||| |||||||||||| Sbjct 6324 TCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTC 6364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565190919974400