Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6716 131 2e-25 seq2517 125 7e-24 seq1025 123 2e-23 seq2396 96.9 3e-15 seq2272 96.9 3e-15 seq1439 96.9 3e-15 seq1067 93.3 4e-14 seq2535 87.8 2e-12 >seq6716 Length=19574 Score = 131 bits (144), Expect = 2e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| |||||||| |||| ||||||||| | | ||||| |||||| || || Sbjct 10528 CAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGAAAAGGT 10587 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | ||| |||||||||||||| || ||||||||||| |||||| ||| ||||| || Sbjct 10588 GAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAGCTGCCGCTGAA 10647 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 ||||| ||||||||| || ||| | |||||||| |||||| |||| Sbjct 10648 GAAGATGCCCTCGACTGCGGCGTAGGCCACCAGCCGCTCGGCGAA 10692 Score = 122 bits (134), Expect = 9e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| |||||||| |||| ||||||||| | | ||||| |||||| ||| || Sbjct 5350 CAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGAGAAGGT 5409 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | ||| |||||||||||||| || |||||||| || |||||| ||| ||||| ||| Sbjct 5410 GAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGCTAAA 5469 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 || || |||||| || |||| | | ||||| || |||||| |||| Sbjct 5470 GAGGATGCCCTCCACAGCCGTGTAGGCCACAAGCCGCTCGGCGAA 5514 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 133253 CCTGCACTTC-TTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311 ||||||| || || || || ||| | |||| ||||| ||||||||||||| |||| Sbjct 12026 CCTGCACCTCCTTCAGA-AACCGCGCCCCCAGGTTTTCCAAGACGATGCCGTCGGAGGCG 12084 Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAG 133371 ||||| || |||||||| ||| |||||| ||||||||| |||||| | || | |||| Sbjct 12085 GCGAAGAACGCCAGCACATGCAGGATGAAGTGGCGCTCGCCGTCGTTGAGGCTCGTCCAG 12144 Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 | |||| |||| | ||||| || |||||| Sbjct 12145 TGGCGCATGTCGTCCCCGAGGTCGACTTCCTCG 12177 >seq2517 Length=9782 Score = 125 bits (138), Expect = 7e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| |||||||| |||| ||||||||| | | ||||| |||||| ||| || Sbjct 4639 CAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGT 4580 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | ||| |||||||||||||| || |||||||| || |||||| ||| ||||| || Sbjct 4579 GAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGCTGAA 4520 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 ||||| ||||||||| || ||| | ||||| |||||||| Sbjct 4519 GAAGATGCCCTCGACCGCGGCGTAGGCCACAAGGCGCTC 4481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 133252 ACCTGCACTTC-TTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310 ||||| || || ||||| || ||| | |||| || || ||||||||||||| || Sbjct 2829 ACCTGGACCTCCTTGAGA-AAGCGCGCCCCCAGGTTCTCCAGGACGATGCCGTCGGAAGC 2771 Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCA 133370 |||||| || || ||||||||| |||||| |||||||||| | | || |||||| Sbjct 2770 GGCGAAGAACGCGAGCACGTGCAGGATGAAGTGGCGCTCGTCGCCCGACAGCTTCTCCCA 2711 Query 133371 GTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 || ||| |||| | | |||||| ||||||||| Sbjct 2710 GTGCCGCATGTCGTCGCCCAGGTCGACCTCCTCG 2677 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 132614 CGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAAT 132673 ||| ||||| || |||||| || || || || || | | | |||||| ||| | | Sbjct 5583 CGCGCACCTCTT-CTCAAAGAAGTTGGTCTTGCCGTTGAGGCTGATGAGCTCCATCCAGT 5525 Query 132674 CCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGG 132733 | ||||||||||| ||| ||| ||||| || | |||| | || ||||| | ||||| Sbjct 5524 CAAAGGGGTTGGCGCTGTGGTACTGCTTCTCGCAGCCCAGGGCCACCAGCAGGCGGTCGG 5465 Query 132734 CCACGAACTCGATGTATTGCGACAT 132758 |||| ||||||||||| |||| ||| Sbjct 5464 CCACAAACTCGATGTACTGCGCCAT 5440 >seq1025 Length=17526 Score = 123 bits (136), Expect = 2e-23 Identities = 154/207 (74%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| |||||||| |||| |||||||||| | ||||| ||||||||||| || | Sbjct 16415 GCAGGCAAAGTCTGTGTGCAGCCCCTCGTCCCGGCTGATGAGCTCGTTGCTGAACGTGAG 16474 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||||||||||| || || |||| ||||||||||||| ||| ||||| ||| Sbjct 16475 CCCTGGCATGAGGCCACGCTTCTTGATCCAAAATATGGCGCAGAAGCTGCCGCTGAAGTG 16534 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || |||||||||| ||| || |||| ||| |||| || || | ||| | |||| | Sbjct 16535 GATGCCCTCGACGCACGCAAACGCCAGCAGCCGCT-GCGCAAAG-GGC-GCCCCGCTGCC 16591 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTT 133100 | ||||||||||||||| |||| || Sbjct 16592 GCCCCAGCGCAGCGCCCAGGCGGCTTT 16618 >seq2396 Length=9575 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | || ||||| |||||||| |||| ||| Sbjct 679 GGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGC 620 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| |||| ||||| |||||||||| || | Sbjct 619 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 560 Query 38466 GGCGGC 38471 || ||| Sbjct 559 GGTGGC 554 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | || ||||| |||||||| |||| ||| Sbjct 1137 GGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGC 1078 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| |||| ||||| |||||||||| || | Sbjct 1077 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 1018 Query 38466 GGCGGC 38471 || ||| Sbjct 1017 GGTGGC 1012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 95/122 (78%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 38351 TCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| ||| |||| ||||| || || | ||| ||||| |||||||| |||| ||||||| Sbjct 161 TCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCC 102 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | |||||||||||||| ||||| |||| ||||| |||||||||| || | || | Sbjct 101 TGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGCGGTG 42 Query 38470 GC 38471 || Sbjct 41 GC 40 >seq2272 Length=9786 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||||||||| |||||||| || | ||| Sbjct 5367 GGGATCCCCCCGGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGC 5308 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||| || ||||| | |||||||| ||||||||||| || | Sbjct 5307 ACCCTGGCTGACTACAACATTCAGAAGGAGTCAACGCTGCACTTGGTGCTGCGCCTGCGC 5248 Query 38466 GGCGGC 38471 || ||| Sbjct 5247 GGTGGC 5242 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || || | |||||||| |||||||| |||| ||| Sbjct 5877 GGCATTCCCCCGGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGC 5818 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||| ||||||||||| ||||| | ||||| || |||||||||| || | Sbjct 5817 ACCCTGGCCGATTACAACATCCAGAAGGAGTCCACGCTCCACCTGGTGCTGCGCCTGCGC 5758 Query 38466 GGCGGC 38471 || ||| Sbjct 5757 GGTGGC 5752 Score = 95.1 bits (104), Expect = 1e-14 Identities = 95/122 (78%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 38351 TCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| ||| |||| ||||| || || | |||||||| |||||||| |||| ||||||| Sbjct 4864 TCCCTCCGGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACCC 4805 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | ||||||||||||||| ||||| | ||||| || |||||||||| || | || | Sbjct 4804 TGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTGGTGCTGCGCCTGCGCGGTG 4745 Query 38470 GC 38471 || Sbjct 4744 GC 4743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/109 (80%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 38351 TCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| ||| |||| ||||| || || | || ||||| |||||||| |||| ||||||| Sbjct 6372 TCCCTCCGGACCAGCAGCGCCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGCACCC 6313 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | |||||||||||||| ||||| | |||||||| ||||||||||| Sbjct 6312 TGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCG 6264 >seq1439 Length=14137 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | || ||||| |||||||| |||| ||| Sbjct 2884 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGC 2943 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| |||| || || |||||||||| || | Sbjct 2944 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTGCGCCTGCGC 3003 Query 38466 GGCGGC 38471 |||||| Sbjct 3004 GGCGGC 3009 >seq1067 Length=17102 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| || | ||| Sbjct 11092 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGC 11151 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| | ||||| || |||||||||| || | Sbjct 11152 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTGGTGCTGCGCCTGCGC 11211 Query 38466 GGCGGC 38471 || ||| Sbjct 11212 GGTGGC 11217 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 38351 TCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| ||| |||| ||||| || || | ||| ||||| |||||||| |||| ||||||| Sbjct 10622 TCCCTCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCC 10681 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | ||||||||||||||| ||||| | || || || |||||||||| || | || | Sbjct 10682 TGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGCGGTG 10741 Query 38470 GC 38471 || Sbjct 10742 GC 10743 Score = 86.0 bits (94), Expect = 6e-12 Identities = 93/122 (76%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 38351 TCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| ||| |||| ||||| || || | ||| ||||| |||||||| |||| ||||||| Sbjct 10093 TCCCTCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCC 10152 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | ||| ||||||||||| ||||| | || || || |||||||||| || | || | Sbjct 10153 TGGCCGATTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTG 10212 Query 38470 GC 38471 || Sbjct 10213 GC 10214 >seq2535 Length=8865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 132967 CCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACG 133026 ||||| || |||||||| ||||||||| ||| ||||| ||| || |||||||||| Sbjct 577 CCGCGCTTCTTGAGCCAGAATATGGCGCAGAAGCTGCCGCTGAAGTGGATGCCCTCGACG 636 Query 133027 GCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGC 133086 ||| || |||| ||| |||| |||||| || | ||| ||| |||||||||| Sbjct 637 CACGCAAACGCCAGCAGCCGCTGCGCGAACGCCGCGCCGCTGCCGGC---CCAGCGCAGC 693 Query 133087 GCCCATTCGGCCTT 133100 ||||| ||||||| Sbjct 694 GCCCAGGCGGCCTT 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500130785484800