Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4697 104 3e-17 seq664 96.9 4e-15 >seq4697 Length=4465 Score = 104 bits (114), Expect = 3e-17 Identities = 197/287 (69%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 11590 TCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG 11649 ||||| |||||||| || || || ||||||||||||||||| || ||||| ||||| | Sbjct 1355 TCGAACCCGTCCATCTCCGTCAGCAGCTGGTTGATCGTCTGCTCGCGCTCGTCGTT-GCC 1297 Query 11650 GGCATAC---CACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706 | || | | |||||| |||| || || ||||||||||| |||||||| | | Sbjct 1296 GCCACCCAGGCCGCTGCCG--CGCTGGCGCCCCACCGCGTCAATCTCGTCGATGAAGATG 1239 Query 11707 ATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 || || || || || |||| || || || || || ||||| | || || || Sbjct 1238 ATGCAGGGCGCCTTAGCCTTGGCCTTCTCAAACAGGTCGCGCACACGGCTGGCGCCCACG 1179 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCA 11826 || || |||| ||| ||||| | | ||| | || | ||||||| | |||| Sbjct 1178 CCGACAAACAGCTCCACGAACTCAGAGGCGGCGCAGGAGAAGAAGGGAGTGCCGGCCTCA 1119 Query 11827 CCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACC 11873 || |||| ||| || || || ||||| ||||||||||| | ||| Sbjct 1118 CCCGCGACGGCCTTGGCCAGAAGGGTCTTGCCCGTACCAGGGGGACC 1072 >seq664 Length=23666 Score = 96.9 bits (106), Expect = 4e-15 Identities = 196/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 11590 TCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG 11649 || || || ||||| ||||| || ||||||||||||||||| || ||||| |||||| | Sbjct 6660 TCAAAGCCATCCATCTCTGTCAGCAGCTGGTTGATCGTCTGCTCGCGCTCGTCGTTGCCG 6601 Query 11650 ---GGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706 ||| || |||||| |||| || || || || ||||| |||||||| | | Sbjct 6600 CCACCCATGCC-GCTGCCG--CGCTGGCGGCCCACGGCATCGATCTCGTCGATGAAGATG 6544 Query 11707 ATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 || || ||| ||||| |||| || || || || || || || | || || || Sbjct 6543 ATGCAGGGTGCCTTGGCCTTGGCCTTCTCAAACAGGTCGCGCACGCGGCTGGCGCCCACG 6484 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCA 11826 || || |||| ||| || || | | ||| | || | |||||| || |||| Sbjct 6483 CCGACAAACAGCTCCACAAACTCAGAGGCGGCGCAGGAGAAGAAGGGGGTGCCAGCCTCA 6424 Query 11827 CCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCA 11874 ||||| | ||| || ||||| ||||| || |||||||| | |||| Sbjct 6423 CCAGCCACGGCCTTGGCCAGGAGGGTCTTGCCGGTACCAGGGGGACCA 6376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588926526016000