Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq664 109 6e-19 seq6716 84.2 3e-11 >seq664 Length=23666 Score = 109 bits (120), Expect = 6e-19 Identities = 193/279 (69%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 ||||| |||||||||||||||| || ||||| || || || || || || || || || Sbjct 6660 TCAAAGCCATCCATCTCTGTCAGCAGCTGGTTGATCGTCTGCTCGCGCTCGTCGTT-GCC 6602 Query 9339 GGCATACCACCAGCA-CTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 | || | | || | ||| || ||||||||||| ||||| || ||||||| || Sbjct 6601 GCCACCCATGCCGCTGCCGCGCTGGCGGCCCACGGCATCGATCTCGTCGATGAAGATGAT 6542 Query 9398 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || ||| || | ||| | ||||| || ||||| || | |||||||||| || Sbjct 6541 GCAGGGTGCCTTGGCCTTGGCCTTCTCAAACAGGTCGCGCACGCGGCTGGCGCCCACGCC 6482 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| ||||||||| | | ||||| || || ||||||| || ||||| Sbjct 6481 GACAAACAGCTCCACAAACTCAGAGGCGGCGCAGGAGAAGAAGGGGGTGCCAGCCTCACC 6422 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTgg 9556 || | ||| ||| || || ||||| || ||||| || Sbjct 6421 AGCCACGGCCTTGGCCAGGAGGGTCTTGCCGGTACCAGG 6383 >seq6716 Length=19574 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||| || || || || |||||| ||||| |||||||| || Sbjct 5368 GTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 5427 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| ||| |||| ||| ||||||||| Sbjct 5428 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGCTAAAGAGGATGCCCTCCACAGC 5487 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGA 117440 || | || | ||| |||||||||||| | |||| Sbjct 5488 CGTGTAGGCCACAAGCCGCTCGGCGAAGCACTGAGA 5523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589931241612800