Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq6720 762 0.0 >seq6720 Length=135362 Score = 762 bits (844), Expect = 0.0 Identities = 758/979 (77%), Gaps = 2/979 (0%) Strand=Plus/Minus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 || || |||||| | || || || | ||||| | || ||||||||||||| || | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || | || |||| || ||||| ||||| ||| ||||||||| ||||| Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 || || || |||||||| |||||||| || || ||||||| | | || |||||||| Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 ||||||||||||||| || | ||| | || |||||||| |||||||||||||| || || Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 |||||||| || || | ||||||||| | || ||||||||||||| |||| | |||| Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 180047 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCG 180106 | ||||||| | | || | | ||||||||||||||||||||||||||||| || Sbjct 37095 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 37036 Query 180107 CTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 180166 || |||||||| || |||||||| || || || || |||||||| ||||| ||| |||| Sbjct 37035 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 36976 Query 180167 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCAT 180226 |||||| | |||| || |||| |||||||| |||||||| | ||||| | || || Sbjct 36975 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 36916 Query 180227 TTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCC 180286 ||||| || ||||||| |||| | || |||||||| ||||||||||| | |||||||| Sbjct 36915 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 36856 Query 180287 CTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGG 180346 ||||||||| | || || || ||||| || || |||||| | ||||| || |||||||| Sbjct 36855 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 36796 Query 180347 TTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGG 180406 |||| | || || || ||| | | |||||||| ||||||| || || ||| | || Sbjct 36795 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 36736 Query 180407 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGG 180466 |||||| |||||||||||||||||||| ||||||||||| |||||||| || ||||| || Sbjct 36735 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 36676 Query 180467 TCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGC 180526 |||| | |||||||| || ||||| ||||||||||| |||||| | ||||||||| | || Sbjct 36675 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 36616 Query 180527 AGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 180586 || ||||| || | |||| ||||||||||| | || || || ||||||||||| Sbjct 36615 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 36556 Query 180587 CCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACAC 180646 | | ||||| |||||||||||||| || | ||||| ||||||||||| | ||||| Sbjct 36555 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 36496 Query 180647 TTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 180706 |||||| ||| | ||||||| ||| | ||||||||||| |||||||| ||||| || Sbjct 36495 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 36436 Query 180707 TCACAACTTCCCACTTGAC 180725 ||||||||||||| | ||| Sbjct 36435 TCACAACTTCCCATTAGAC 36417 Score = 762 bits (844), Expect = 0.0 Identities = 758/979 (77%), Gaps = 2/979 (0%) Strand=Plus/Plus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 || || |||||| | || || || | ||||| | || ||||||||||||| || | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || | || |||| || ||||| ||||| ||| ||||||||| ||||| Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 || || || |||||||| |||||||| || || ||||||| | | || |||||||| Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 ||||||||||||||| || | ||| | || |||||||| |||||||||||||| || || Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 |||||||| || || | ||||||||| | || ||||||||||||| |||| | |||| Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 180047 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCG 180106 | ||||||| | | || | | ||||||||||||||||||||||||||||| || Sbjct 108553 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 108612 Query 180107 CTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 180166 || |||||||| || |||||||| || || || || |||||||| ||||| ||| |||| Sbjct 108613 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 108672 Query 180167 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCAT 180226 |||||| | |||| || |||| |||||||| |||||||| | ||||| | || || Sbjct 108673 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 108732 Query 180227 TTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCC 180286 ||||| || ||||||| |||| | || |||||||| ||||||||||| | |||||||| Sbjct 108733 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 108792 Query 180287 CTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGG 180346 ||||||||| | || || || ||||| || || |||||| | ||||| || |||||||| Sbjct 108793 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 108852 Query 180347 TTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGG 180406 |||| | || || || ||| | | |||||||| ||||||| || || ||| | || Sbjct 108853 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 108912 Query 180407 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGG 180466 |||||| |||||||||||||||||||| ||||||||||| |||||||| || ||||| || Sbjct 108913 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 108972 Query 180467 TCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGC 180526 |||| | |||||||| || ||||| ||||||||||| |||||| | ||||||||| | || Sbjct 108973 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 109032 Query 180527 AGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 180586 || ||||| || | |||| ||||||||||| | || || || ||||||||||| Sbjct 109033 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 109092 Query 180587 CCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACAC 180646 | | ||||| |||||||||||||| || | ||||| ||||||||||| | ||||| Sbjct 109093 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 109152 Query 180647 TTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 180706 |||||| ||| | ||||||| ||| | ||||||||||| |||||||| ||||| || Sbjct 109153 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 109212 Query 180707 TCACAACTTCCCACTTGAC 180725 ||||||||||||| | ||| Sbjct 109213 TCACAACTTCCCATTAGAC 109231 Score = 508 bits (562), Expect = 7e-139 Identities = 722/1016 (71%), Gaps = 0/1016 (0%) Strand=Plus/Plus Query 181421 TGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 181480 ||||||||| |||||||||| | | ||||| ||||| ||||| || ||||| Sbjct 121699 TGGTTTGACGATTGTGATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCA 121758 Query 181481 GGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACT 181540 || || ||| | || || ||| ||| ||||| | || || ||| | ||||| || || Sbjct 121759 GGTCTTCTTTTATTACCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACA 121818 Query 181541 TTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTC 181600 |||||||| || |||||||| || || || || |||| ||| | || ||| ||| ||| Sbjct 121819 TTTGTTACTTCTTGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTC 121878 Query 181601 CTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 181660 | || || || || || || || || || ||||| ||||||| | | | ||||| Sbjct 121879 TTAACTGCTGCAGTTTCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGG 121938 Query 181661 GGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTT 181720 || ||||||||||| || || || || ||| ||| | || || | ||| ||||| Sbjct 121939 GGACCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTT 121998 Query 181721 GTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCT 181780 || || || || || || || | | | || ||||||||| | | ||||||||| |||| Sbjct 121999 GTAGCACTGCATGGTGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCA 122058 Query 181781 CGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTC 181840 ||| | | | || || || || || |||||||| || | || ||||||||||| Sbjct 122059 CGTTCAGTAAACTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTT 122118 Query 181841 GTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTC 181900 || ||||||||| | || || ||| | || ||||| |||||||||| || || ||||| Sbjct 122119 GTTTCTGTATTTTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTT 122178 Query 181901 GGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 181960 ||||| || || |||||||| || | | ||| |||| || || || || ||||| || Sbjct 122179 GGTGTTGCCGCTATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTT 122238 Query 181961 AATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATT 182020 || || ||||| |||||||| ||||||||| | | |||| || || | | ||| ||| Sbjct 122239 AACCCATTCCACATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATT 122298 Query 182021 CACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAA 182080 || |||| || || || |||||||| | |||| ||||| || || || ||| Sbjct 122299 CATGGTGCTACAGTAGAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGT 122358 Query 182081 GCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGG 182140 ||||| | | || |||| |||||||| || || ||||| ||||| || | |||||| Sbjct 122359 GCATTTAACCCTACGCAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGG 122418 Query 182141 TCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTT 182200 || || || || ||| | || ||| || || | ||||| || ||||||||| | ||| Sbjct 122419 TCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTT 122478 Query 182201 GTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT 182260 |||||||| | |||||||||| | | || ||| || | ||| | ||||| ||| | Sbjct 122479 GTTCCTGTGACAGGTCTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTA 122538 Query 182261 CGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACG 182320 |||||||| ||||| || || ||||| || | || | ||||| ||||| || || || Sbjct 122539 CGTGCTTACGACTTCGTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACT 122598 Query 182321 TTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGAT 182380 |||||||| || ||| |||| | ||||||||| | ||||| ||| | || || || Sbjct 122599 TTCTACACTAAAAACCTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGAC 122658 Query 182381 CAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| || ||| || ||||| || ||||||||||| | |||||||| || Sbjct 122659 CAGCCACACGAACGCTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 |||| ||||||||||||| ||||| | || ||||||| || |||||||||||||| || Sbjct 122893 TCCTTAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACCGATAGGTCGTAGGTTCAAGTC 122952 Query 141315 CTACCTGGGGAG 141326 |||||||||||| Sbjct 122953 CTACCTGGGGAG 122964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610345526668800