Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq6720 729 0.0 >seq6720 Length=135362 Score = 729 bits (808), Expect = 0.0 Identities = 759/990 (77%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 ||||| |||||| | || ||||| | ||| | | || | |||||||| ||||| || Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 169462 ATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGTTGCATTCATTGCAGCACC 169520 ||||| || |||||| | ||||| || | ||| ||||| | | ||||| ||||| || Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTACATC-TGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 169521 TCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAA 169580 ||| || |||||||| || ||| | || ||||| | |||||||| || || |||||||| Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 169581 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAAT 169640 ||||||||||||||| || | || |||| ||||| ||||| || |||||||||||||| Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 169641 CTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAAT 169700 |||||||| || || | || || ||||| || || ||||||||||| || || | | Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 169701 CTTCCACTTCCTTATT-GGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACA 169759 | ||||||| ||||| ||| | || | |||||||| | |||||||||| || ||| Sbjct 37095 TTGCCACTTC-TTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 37037 Query 169760 GATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCG 169819 | ||||| ||||||||||||||||||||||| ||||| || |||||| |||||||| | Sbjct 37036 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTG 36977 Query 169820 CTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 169879 | ||||||||| | |||||| | || || ||||| ||||||||||||||||| |||||| Sbjct 36976 CAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 36917 Query 169880 TCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATC 169939 |||| |||||||||||||| ||| |||| |||||||| ||||| |||||| ||||||| | Sbjct 36916 TCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACC 36857 Query 169940 CTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATG 169999 | ||||||||| ||| || || || | || || || || ||||||||||| ||||| | Sbjct 36856 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 36797 Query 170000 GTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATG 170059 ||||| | || |||||||| ||||| | ||||| || || | || || ||| | | Sbjct 36796 GTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAG 36737 Query 170060 GTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTG 170119 |||| || || || ||||||||||| || |||||||| ||||| |||||||||||||||| Sbjct 36736 GTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTG 36677 Query 170120 GTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAG 170179 ||||| | |||||||| || || |||||||||||||| | ||||||||||| ||| Sbjct 36676 GTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 36617 Query 170180 CAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 170239 | | || || || | || | ||||| || || | ||| | | || |||||||||| Sbjct 36616 CTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCA 36557 Query 170240 ACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAA 170299 |||| || || |||||||| |||||||||||||||||| | | || | | | Sbjct 36556 ACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACA 36497 Query 170300 CATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATG 170359 | |||| ||| | | ||| | || ||||| ||||||||||| ||||| ||| | || | Sbjct 36496 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 36437 Query 170360 CACACAACTTCCCACTAGACCTAGCATCTG 170389 | |||||||||||| ||||| |||| |||| Sbjct 36436 CTCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 729 bits (808), Expect = 0.0 Identities = 759/990 (77%), Gaps = 4/990 (0%) Strand=Plus/Plus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 ||||| |||||| | || ||||| | ||| | | || | |||||||| ||||| || Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 169462 ATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGTTGCATTCATTGCAGCACC 169520 ||||| || |||||| | ||||| || | ||| ||||| | | ||||| ||||| || Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTACATC-TGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 169521 TCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAA 169580 ||| || |||||||| || ||| | || ||||| | |||||||| || || |||||||| Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 169581 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAAT 169640 ||||||||||||||| || | || |||| ||||| ||||| || |||||||||||||| Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 169641 CTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAAT 169700 |||||||| || || | || || ||||| || || ||||||||||| || || | | Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 169701 CTTCCACTTCCTTATT-GGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACA 169759 | |||||| |||||| ||| | || | |||||||| | |||||||||| || ||| Sbjct 108553 TTGCCACTT-CTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 108611 Query 169760 GATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCG 169819 | ||||| ||||||||||||||||||||||| ||||| || |||||| |||||||| | Sbjct 108612 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTG 108671 Query 169820 CTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 169879 | ||||||||| | |||||| | || || ||||| ||||||||||||||||| |||||| Sbjct 108672 CAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 108731 Query 169880 TCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATC 169939 |||| |||||||||||||| ||| |||| |||||||| ||||| |||||| ||||||| | Sbjct 108732 TCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACC 108791 Query 169940 CTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATG 169999 | ||||||||| ||| || || || | || || || || ||||||||||| ||||| | Sbjct 108792 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 108851 Query 170000 GTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATG 170059 ||||| | || |||||||| ||||| | ||||| || || | || || ||| | | Sbjct 108852 GTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAG 108911 Query 170060 GTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTG 170119 |||| || || || ||||||||||| || |||||||| ||||| |||||||||||||||| Sbjct 108912 GTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTG 108971 Query 170120 GTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAG 170179 ||||| | |||||||| || || |||||||||||||| | ||||||||||| ||| Sbjct 108972 GTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 109031 Query 170180 CAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 170239 | | || || || | || | ||||| || || | ||| | | || |||||||||| Sbjct 109032 CTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCA 109091 Query 170240 ACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAA 170299 |||| || || |||||||| |||||||||||||||||| | | || | | | Sbjct 109092 ACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACA 109151 Query 170300 CATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATG 170359 | |||| ||| | | ||| | || ||||| ||||||||||| ||||| ||| | || | Sbjct 109152 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 109211 Query 170360 CACACAACTTCCCACTAGACCTAGCATCTG 170389 | |||||||||||| ||||| |||| |||| Sbjct 109212 CTCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 556 bits (616), Expect = 1e-153 Identities = 747/1043 (72%), Gaps = 21/1043 (2%) Strand=Plus/Plus Query 170525 TTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTC 170584 ||||||||| | | ||| ||||||||| ||| |||||||| || |||| ||||| Sbjct 121698 TTGGTTTGACGATTGTGATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTC 121757 Query 170585 TGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTAC 170644 |||||| | | | |||||||| || | || | ||||||||||| ||||| || Sbjct 121758 AGGTCTTCTTTTATTACCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAAC 121817 Query 170645 CTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTT 170704 || ||||| || ||||| ||||||||| | || | || || | || || |||||||| Sbjct 121818 ATTTGTTACTTCTTGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 121877 Query 170705 CCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTG 170764 | |||| || |||||||| || || | || |||| |||| | | | || |||| Sbjct 121878 CTTAACTGCTGCAGTTTCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTG 121937 Query 170765 GGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTT 170824 |||||||||||| |||||| ||| ||||||| ||| | || |||||||||| || Sbjct 121938 GGGACCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTT 121997 Query 170825 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGC 170884 ||||||| | ||||| | ||||| | || ||||| ||| | | |||||||| || || Sbjct 121998 TGTAGCACTGCATGGTGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGC 122057 Query 170885 AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTT 170944 | | ||| | | | || || |||||| | || |||||||| || || || || Sbjct 122058 ACGTTCAGTAAACTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATT 122117 Query 170945 CACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATT 171004 | | ||| | || || || ||||||| ||||||||||||| || || Sbjct 122118 TGTTTCTGTATTTTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTT 122177 Query 171005 CGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATT 171064 ||||| || || ||||| |||| |||||||||| | ||||||||||||||| ||| | Sbjct 122178 TGGTGTTGCCGCTATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACT 122237 Query 171065 GAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCAT 171124 || ||||| ||||||||||| ||||| || | |||||| || |||||||||| || Sbjct 122238 TAACCCATTCCACATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTAT 122297 Query 171125 TCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAA 171184 ||||||||| ||||| | || || | | ||||| | | || || ||| Sbjct 122298 TCATGGTGCTACAGTAGAAAATACTCTTTTCGAAGA------TGGTGATGGTGCTAA--- 122348 Query 171185 AATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTAT 171244 ||||||||||| ||| | ||||| || | |||||||||||| ||| Sbjct 122349 ------------CACATTCCGTGCATTTAACCCTACGCAAGCTGAAGAAACTTACTCTAT 122396 Query 171245 GATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATT 171304 | | ||||| || |||||||||||||| || |||||| | ||||| || |||||| | | Sbjct 122397 GGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTG 122456 Query 171305 TTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTAT 171364 ||||||||| ||||||| || |||||||| | ||| | |||| || |||| ||| | Sbjct 122457 GTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTGCTATTGGTGT 122516 Query 171365 CGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGC 171424 |||||| |||| |||||| | | || ||||| || || || |||||||| | || || Sbjct 122517 TGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGATTCGTGCTGC 122576 Query 171425 AGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAG 171484 ||||| ||||| || || |||||||||||||| || | ||||||||||||||||| | Sbjct 122577 TGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATGAAGGTATCCG 122636 Query 171485 AGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTT 171544 || |||||| | || ||||| ||||| || ||| ||||||||||||||||| || Sbjct 122637 TGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAGAAGAAGTATT 122696 Query 171545 ACCAAGAGGTAACGCACTTTAAA 171567 ||| | |||||||| || |||| Sbjct 122697 ACCTCGTGGTAACGCTCTATAAA 122719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579164146124800