Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq6720 735 0.0 >seq6720 Length=135362 Score = 735 bits (814), Expect = 0.0 Identities = 761/993 (77%), Gaps = 8/993 (1%) Strand=Plus/Minus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||| || |||||| | || |||||| | ||||| | || ||||||||||||| || | Sbjct 37395 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 37336 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 ||||| || | || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 37335 AATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 37277 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || ||||| || |||||||| || || ||||||| | | || ||||||| Sbjct 37276 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 37217 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 |||||||||||||||| || ||||| | ||||| || || || ||||||||||| || | Sbjct 37216 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 37157 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | |||||||| || || | || |||||||| || ||||||||||||| |||| || | | Sbjct 37156 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 37097 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCAT---ACATGGGACGTGAATGGGAACTTTCAT 168217 | | |||||| | | ||| | ||||| ||||||| ||||| ||||||||||| | Sbjct 37096 TTTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 37040 Query 168218 ATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGA 168277 | ||||||||||||||||| |||||||||||||| ||||| || ||||| ||||| || | Sbjct 37039 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 36980 Query 168278 GTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCG 168337 |||||||||| || | || || |||| |||||| ||||||||||| ||||| | | Sbjct 36979 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 36920 Query 168338 GAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGC 168397 | ||||| || || ||||||| |||| | || ||||||||||||||||| ||| | |||| Sbjct 36919 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 36860 Query 168398 ATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGC 168457 | || ||||| ||| | || |||||||| ||||||||||| || || ||||||| Sbjct 36859 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 36800 Query 168458 ACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACT 168517 |||| || || ||||| || | | | || || ||||||| |||||| ||| Sbjct 36799 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 36740 Query 168518 ACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACT 168577 | |||||||| || || ||||||||||| || |||||||||||||| || || ||||||| Sbjct 36739 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 36680 Query 168578 TCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCC 168637 | |||||||| |||||||||||||| |||||||||||||| || || || ||||||||| Sbjct 36679 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 36620 Query 168638 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 168697 | ||||| ||||| || || |||| |||||||| || | || | || || ||||||| Sbjct 36619 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCAT 36560 Query 168698 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 168757 ||||| | ||||| |||||||||||||| || | ||||| || |||||||| || | Sbjct 36559 TCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAA 36500 Query 168758 ACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTA 168817 |||| ||||| || | | ||||| ||| | ||||||||||| ||||| || |||| Sbjct 36499 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 36440 Query 168818 ACGCACACAACTTCCCACTCGATCTTGCTGCTG 168850 |||| |||||||||||| | || | ||| ||| Sbjct 36439 ACGCTCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 735 bits (814), Expect = 0.0 Identities = 761/993 (77%), Gaps = 8/993 (1%) Strand=Plus/Plus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||| || |||||| | || |||||| | ||||| | || ||||||||||||| || | Sbjct 108253 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 108312 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 ||||| || | || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 108313 AATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 108371 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || ||||| || |||||||| || || ||||||| | | || ||||||| Sbjct 108372 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 108431 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 |||||||||||||||| || ||||| | ||||| || || || ||||||||||| || | Sbjct 108432 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 108491 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | |||||||| || || | || |||||||| || ||||||||||||| |||| || | | Sbjct 108492 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 108551 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCA---TACATGGGACGTGAATGGGAACTTTCAT 168217 | | |||||| | | ||| | |||| |||||||| ||||| ||||||||||| | Sbjct 108552 TTTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 108608 Query 168218 ATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGA 168277 | ||||||||||||||||| |||||||||||||| ||||| || ||||| ||||| || | Sbjct 108609 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 108668 Query 168278 GTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCG 168337 |||||||||| || | || || |||| |||||| ||||||||||| ||||| | | Sbjct 108669 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 108728 Query 168338 GAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGC 168397 | ||||| || || ||||||| |||| | || ||||||||||||||||| ||| | |||| Sbjct 108729 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 108788 Query 168398 ATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGC 168457 | || ||||| ||| | || |||||||| ||||||||||| || || ||||||| Sbjct 108789 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 108848 Query 168458 ACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACT 168517 |||| || || ||||| || | | | || || ||||||| |||||| ||| Sbjct 108849 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 108908 Query 168518 ACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACT 168577 | |||||||| || || ||||||||||| || |||||||||||||| || || ||||||| Sbjct 108909 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 108968 Query 168578 TCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCC 168637 | |||||||| |||||||||||||| |||||||||||||| || || || ||||||||| Sbjct 108969 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 109028 Query 168638 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 168697 | ||||| ||||| || || |||| |||||||| || | || | || || ||||||| Sbjct 109029 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCAT 109088 Query 168698 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 168757 ||||| | ||||| |||||||||||||| || | ||||| || |||||||| || | Sbjct 109089 TCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAA 109148 Query 168758 ACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTA 168817 |||| ||||| || | | ||||| ||| | ||||||||||| ||||| || |||| Sbjct 109149 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 109208 Query 168818 ACGCACACAACTTCCCACTCGATCTTGCTGCTG 168850 |||| |||||||||||| | || | ||| ||| Sbjct 109209 ACGCTCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 508 bits (562), Expect = 7e-139 Identities = 713/1001 (71%), Gaps = 0/1001 (0%) Strand=Plus/Plus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 ||||||||| | | ||||| ||||| || | |||||||| ||||| ||| | | Sbjct 121714 GATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTA 121773 Query 169379 CCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGG 169438 || ||| ||| |||| | || || ||| | ||||| ||| | ||||||||||| ||| Sbjct 121774 CCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGG 121833 Query 169439 TACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTC 169498 ||||| || || | || | |||||||||||| ||||||| | |||||||| || Sbjct 121834 TACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTT 121893 Query 169499 AGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAA 169558 || || || || ||||| || || | | || | ||||| || ||||| ||| Sbjct 121894 TCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAA 121953 Query 169559 GGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGT 169618 || || || || ||||||||||| |||||| | |||| ||||||||||| |||||| Sbjct 121954 GGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGT 122013 Query 169619 GCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATC 169678 || |||| || |||||||| ||| | | || |||||| | |||||| | | | Sbjct 122014 GCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGTTCAGTAAACTTA 122073 Query 169679 CGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTT 169738 ||||| ||||| || ||||| ||||||| || |||||||||||||| ||| ||| | Sbjct 122074 CGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTTA 122133 Query 169739 ATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATC 169798 || ||||| | || || || |||||||| || || ||||| || | || || Sbjct 122134 ATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTATT 122193 Query 169799 TTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATG 169858 ||| | || | || ||| | ||||| |||||||||||||| | || |||||||||||| Sbjct 122194 TTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACATG 122253 Query 169859 ATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTA 169918 ||||| || || || | || || | || | | | |||||| ||||||| ||||||| Sbjct 122254 ATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGTA 122313 Query 169919 GAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACA 169978 || || || | | ||||| ||||| || || || ||| || ||| | | || Sbjct 122314 GAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTACG 122373 Query 169979 CAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGT 170038 || | ||||| ||||| |||||||| || || || | |||||||| || || || ||| Sbjct 122374 CAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGT 122433 Query 170039 ATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGT 170098 | || ||||| ||||| |||||| | || || || ||||| ||||| ||||| | ||| Sbjct 122434 GTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGT 122493 Query 170099 CTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTC 170158 ||||||| || ||||||| || | || | ||||| || | ||||||||||| ||| Sbjct 122494 CTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTC 122553 Query 170159 GTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAAC 170218 || || ||||| | || || ||||||||||||||||| || |||||||| |||||| Sbjct 122554 GTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAAC 122613 Query 170219 ATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAAC 170278 | || | |||||||| | ||||| ||| |||| | || || ||||| ||| | Sbjct 122614 CTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACGC 122673 Query 170279 TTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || | |||||||||||||| | || | |||||||| || Sbjct 122674 TTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574425344217600