Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq6720 769 0.0 >seq6720 Length=135362 Score = 769 bits (852), Expect = 0.0 Identities = 760/976 (78%), Gaps = 10/976 (1%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 || || || ||| | ||||| || | ||||| | || | ||||||||||| || | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||| ||| || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 37334 ATGATCCCTT-GCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 37277 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || ||||||||||| ||||| || ||| | ||||| | | || ||||||| Sbjct 37276 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 37217 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022 |||||||||||||||| || | || | || || ||||| ||||||||||||||||| | Sbjct 37216 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 37157 Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082 |||||||||| || || | || || ||| | |||||||||||||||| |||| | ||| Sbjct 37156 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 37097 Query 164083 TCTTCCACTTCCTGATCGGTATCTATGCAT---ACATGGGTCGTGAGTGGGAACTGTCTT 164139 | | ||||||| | | ||| | ||||| |||||||||||||||||||||| |||| Sbjct 37096 TTTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 37040 Query 164140 ACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCAT 164199 ||||| | ||||||||||||||||| |||||||||||||| || || || || || ||| Sbjct 37039 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 36980 Query 164200 CCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGG 164259 | ||||| ||| | |||| || |||| |||||||| |||||||| | ||||| | | Sbjct 36979 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 36920 Query 164260 GCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGC 164319 | |||||||| || ||||||| |||| | || |||||||| ||||||||||| | |||| Sbjct 36919 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 36860 Query 164320 ACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGC 164379 |||| ||||| ||| | || |||||||| |||||||| ||||| | ||| || |||| Sbjct 36859 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 36800 Query 164380 ACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACT 164439 ||||||| | || ||||| || | | |||||||| || |||| || || ||| Sbjct 36799 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 36740 Query 164440 ATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACT 164499 | |||||||| ||||||||||||||||| || |||||||| || || || |||||||||| Sbjct 36739 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 36680 Query 164500 TTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 164559 |||||||| | |||||||||||||| |||||||||||||| ||||| || ||||||||| Sbjct 36679 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 36620 Query 164560 TTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCAT 164619 | ||||| ||||| || | |||| |||||||| || | ||| | || || ||||||| Sbjct 36619 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCAT 36560 Query 164620 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCA 164679 ||||| | ||||| |||||||||||||| || | | ||| || |||||||| | | Sbjct 36559 TCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAA 36500 Query 164680 ACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTA 164739 |||||||||| ||| | ||||||| ||| | ||||||||||| |||||||| |||| Sbjct 36499 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 36440 Query 164740 ACGCTCACAACTTCCC 164755 |||||||||||||||| Sbjct 36439 ACGCTCACAACTTCCC 36424 Score = 769 bits (852), Expect = 0.0 Identities = 760/976 (78%), Gaps = 10/976 (1%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 || || || ||| | ||||| || | ||||| | || | ||||||||||| || | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||| ||| || |||| || |||||| ||||| ||| |||| |||| |||| Sbjct 108314 ATGATCCCTT-GCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 108371 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || ||||||||||| ||||| || ||| | ||||| | | || ||||||| Sbjct 108372 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 108431 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022 |||||||||||||||| || | || | || || ||||| ||||||||||||||||| | Sbjct 108432 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 108491 Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082 |||||||||| || || | || || ||| | |||||||||||||||| |||| | ||| Sbjct 108492 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 108551 Query 164083 TCTTCCACTTCCTGATCGGTATCTATGCA---TACATGGGTCGTGAGTGGGAACTGTCTT 164139 | | ||||||| | | ||| | |||| ||||||||||||||||||||||| |||| Sbjct 108552 TTTGCCACTTCTTATTAGGTGT---TGCATCTTACATGGGTCGTGAGTGGGAACTTTCTT 108608 Query 164140 ACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCAT 164199 ||||| | ||||||||||||||||| |||||||||||||| || || || || || ||| Sbjct 108609 ACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAA 108668 Query 164200 CCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGG 164259 | ||||| ||| | |||| || |||| |||||||| |||||||| | ||||| | | Sbjct 108669 CTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAG 108728 Query 164260 GCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGC 164319 | |||||||| || ||||||| |||| | || |||||||| ||||||||||| | |||| Sbjct 108729 GTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGC 108788 Query 164320 ACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGC 164379 |||| ||||| ||| | || |||||||| |||||||| ||||| | ||| || |||| Sbjct 108789 ACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGC 108848 Query 164380 ACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACT 164439 ||||||| | || ||||| || | | |||||||| || |||| || || ||| Sbjct 108849 ACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACG 108908 Query 164440 ATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACT 164499 | |||||||| ||||||||||||||||| || |||||||| || || || |||||||||| Sbjct 108909 AAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACT 108968 Query 164500 TTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 164559 |||||||| | |||||||||||||| |||||||||||||| ||||| || ||||||||| Sbjct 108969 TTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCT 109028 Query 164560 TTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCAT 164619 | ||||| ||||| || | |||| |||||||| || | ||| | || || ||||||| Sbjct 109029 TAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCAT 109088 Query 164620 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCA 164679 ||||| | ||||| |||||||||||||| || | | ||| || |||||||| | | Sbjct 109089 TCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAA 109148 Query 164680 ACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTA 164739 |||||||||| ||| | ||||||| ||| | ||||||||||| |||||||| |||| Sbjct 109149 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 109208 Query 164740 ACGCTCACAACTTCCC 164755 |||||||||||||||| Sbjct 109209 ACGCTCACAACTTCCC 109224 Score = 569 bits (630), Expect = 2e-157 Identities = 733/1011 (73%), Gaps = 8/1011 (1%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | ||| ||||| |||||||| |||||||| || |||||| | || Sbjct 121714 GATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTA 121773 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| |||| | || |||||| |||||||||| || || | || |||| Sbjct 121774 CCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGG 121833 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTT 165385 || || || || || |||| ||| || | || ||| ||||| | ||||| |||||| Sbjct 121834 TACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTT 121893 Query 165386 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAA 165445 || ||||||||| || ||||| ||||||| | | || | ||||| ||||| |||||| Sbjct 121894 TCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAA 121953 Query 165446 GGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 165505 || || || | ||| ||| | || || | ||| ||||||| || || || || Sbjct 121954 GGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGT 122013 Query 165506 GCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACGTCTCATCGGTA-- 165563 ||||| | | |||||||||| ||| | ||||| |||||| | |||||| || ||| Sbjct 122014 GCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGT----TCAGTAAA 122069 Query 165564 --TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 165621 | ||||| || || || ||||| ||||||| || || ||||| |||||| || || Sbjct 122070 CTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATT 122129 Query 165622 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGC 165681 | | || |||||| | |||||||| ||||||| ||||| || ||| || || || || Sbjct 122130 TTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGC 122189 Query 165682 AATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCA 165741 || ||| | || | | ||| | ||||| ||||| |||||||| | || || || || Sbjct 122190 TATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCA 122249 Query 165742 TATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTAC 165801 |||||||| ||||| ||| | | |||| || | | | ||| || ||||||| ||| Sbjct 122250 CATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTAC 122309 Query 165802 AGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTC 165861 |||||| |||||||| | |||||||||| | ||| || || ||| |||||| || | Sbjct 122310 AGTAGAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCC 122369 Query 165862 TACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 165921 ||| |||| |||||||| ||||| ||||| || || || | |||||||| || || || Sbjct 122370 TACGCAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTT 122429 Query 165922 CGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 165981 ||| | || ||| || || | ||||| || ||||||||| | ||||||||||| | Sbjct 122430 TGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGAC 122489 Query 165982 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 166041 |||||||||| | | || ||| || | ||| | ||||| ||| | |||||||| || Sbjct 122490 AGGTCTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGA 122549 Query 166042 CTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAA 166101 ||| || || |||||||| | || || ||||| ||||| |||||||| |||||||| || Sbjct 122550 CTTCGTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAA 122609 Query 166102 AAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGA 166161 |||| |||| | ||||||||| | ||||||||| |||| || || || || || || Sbjct 122610 AAACCTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGA 122669 Query 166162 GAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCTGTGAAT 166212 ||| || ||||| |||||||| | ||| | |||||||| || | ||| Sbjct 122670 ACGCTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCTATAAAT 122720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556878018316800