Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq6720 700 0.0 >seq6720 Length=135362 Score = 700 bits (776), Expect = 0.0 Identities = 725/947 (77%), Gaps = 2/947 (0%) Strand=Plus/Minus Query 168533 GGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGT 168591 |||||||||||||| ||||||||||| || ||||||||||| || | ||| |||||| | Sbjct 37352 GGTTGGTTCGGTGTGTTAATGATCCCTTGCTTATTAACAGCTACATC-TGTATTCATTAT 37294 Query 168592 TGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGC 168651 | || || || || || || || |||||||| || ||| | || || || | ||| | Sbjct 37293 CGGCTTCATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTC 37234 Query 168652 TCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 168711 | || | || || |||||||||||||| ||||| || | || | || ||||||||||| Sbjct 37233 TTTATTATACGGTAACAACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGG 37174 Query 168712 TCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGG 168771 ||| ||||||||||||||||||||||| ||| | | || ||||||||||| || ||||| Sbjct 37173 TCTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGG 37114 Query 168772 TCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACA 168831 ||||||||| || | | | ||||||| || | || | | | ||||||||| | | Sbjct 37113 TCCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGA 37054 Query 168832 GTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACC 168891 ||||||| | || ||| | |||||||| | |||||||||||||||||||| ||||| || Sbjct 37053 GTGGGAACTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCC 36994 Query 168892 AGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGA 168951 |||| |||| ||| |||||||||| | | |||||| | || || |||||||||||||| Sbjct 36993 AGTAGCTGCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGA 36934 Query 168952 TGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCA 169011 |||||||||| |||| || ||||| || |||||||||||| ||||||||||||| ||||| Sbjct 36933 TGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCA 36874 Query 169012 CAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCT 169071 ||||||| | ||||| || ||||| ||| ||| || || ||| | || ||||| || | Sbjct 36873 CAACATTTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATT 36814 Query 169072 ATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGA 169131 |||||| || ||||| |||||| | ||||| || || ||||| | || |||||||| | Sbjct 36813 ATTCTCAGCTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAA 36754 Query 169132 AGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGC 169191 |||||| ||| | |||||||| || |||||||||||||| || || || || || || Sbjct 36753 CGAATCTGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGC 36694 Query 169192 AGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAG 169251 ||||| || ||||| ||| | ||||||||||| || ||| ||||||||||| | Sbjct 36693 TGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTC 36634 Query 169252 TCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTAT 169311 | ||||||||| |||| | | || || | || | ||||| || || | ||| | Sbjct 36633 ATTACACTTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTT 36574 Query 169312 CTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAA 169371 | || |||||||||||||| ||||| || ||||| |||||||||||||| ||| | Sbjct 36573 ATCAACTATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACA 36514 Query 169372 CGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGT 169431 ||| | | || |||| |||| | | ||| | || ||| | ||||||||||| Sbjct 36513 AGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGT 36454 Query 169432 AATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCTG 169478 |||||| || ||||||||||||||||||||| |||||||||| |||| Sbjct 36453 AATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 700 bits (776), Expect = 0.0 Identities = 725/947 (77%), Gaps = 2/947 (0%) Strand=Plus/Plus Query 168533 GGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGT 168591 |||||||||||||| ||||||||||| || ||||||||||| || | ||| |||||| | Sbjct 108296 GGTTGGTTCGGTGTGTTAATGATCCCTTGCTTATTAACAGCTACATC-TGTATTCATTAT 108354 Query 168592 TGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGC 168651 | || || || || || || || |||||||| || ||| | || || || | ||| | Sbjct 108355 CGGCTTCATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTC 108414 Query 168652 TCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 168711 | || | || || |||||||||||||| ||||| || | || | || ||||||||||| Sbjct 108415 TTTATTATACGGTAACAACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGG 108474 Query 168712 TCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGG 168771 ||| ||||||||||||||||||||||| ||| | | || ||||||||||| || ||||| Sbjct 108475 TCTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGG 108534 Query 168772 TCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACA 168831 ||||||||| || | | | ||||||| || | || | | | ||||||||| | | Sbjct 108535 TCCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGA 108594 Query 168832 GTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACC 168891 ||||||| | || ||| | |||||||| | |||||||||||||||||||| ||||| || Sbjct 108595 GTGGGAACTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCC 108654 Query 168892 AGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGA 168951 |||| |||| ||| |||||||||| | | |||||| | || || |||||||||||||| Sbjct 108655 AGTAGCTGCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGA 108714 Query 168952 TGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCA 169011 |||||||||| |||| || ||||| || |||||||||||| ||||||||||||| ||||| Sbjct 108715 TGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCA 108774 Query 169012 CAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCT 169071 ||||||| | ||||| || ||||| ||| ||| || || ||| | || ||||| || | Sbjct 108775 CAACATTTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATT 108834 Query 169072 ATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGA 169131 |||||| || ||||| |||||| | ||||| || || ||||| | || |||||||| | Sbjct 108835 ATTCTCAGCTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAA 108894 Query 169132 AGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGC 169191 |||||| ||| | |||||||| || |||||||||||||| || || || || || || Sbjct 108895 CGAATCTGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGC 108954 Query 169192 AGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAG 169251 ||||| || ||||| ||| | ||||||||||| || ||| ||||||||||| | Sbjct 108955 TGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTC 109014 Query 169252 TCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTAT 169311 | ||||||||| |||| | | || || | || | ||||| || || | ||| | Sbjct 109015 ATTACACTTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTT 109074 Query 169312 CTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAA 169371 | || |||||||||||||| ||||| || ||||| |||||||||||||| ||| | Sbjct 109075 ATCAACTATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACA 109134 Query 169372 CGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGT 169431 ||| | | || |||| |||| | | ||| | || ||| | ||||||||||| Sbjct 109135 AGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGT 109194 Query 169432 AATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCTG 169478 |||||| || ||||||||||||||||||||| |||||||||| |||| Sbjct 109195 AATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGCTTCTG 109241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564394186905600