Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq6720 699 0.0 >seq6720 Length=135362 Score = 699 bits (774), Expect = 0.0 Identities = 750/992 (76%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 || || || ||| | || |||||| | ||| | | || | |||||||||||||| | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || || | ||||| || | ||||| | | ||||| ||||| ||| Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 37275 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || |||||||| || ||| | || |||||| | |||||||| ||||| ||||||||| Sbjct 37274 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 37215 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 |||||||||||||| || | || |||| |||||||| ||||| ||||||||||| || Sbjct 37214 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 37155 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| || | |||| || ||||| ||||| ||||||||||| || || | | Sbjct 37154 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 37095 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | ||||||| | | ||| | || | |||||||| | |||||||||| || ||| | Sbjct 37094 TGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 37035 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 ||||||||| | || ||||| ||||| || || ||||| || ||| | || ||| ||| Sbjct 37034 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCA 36975 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || ||| |||| || ||||| ||||||||||||||||| |||||||| Sbjct 36974 GTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 36915 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| |||||||| ||| |||| |||||||| ||||| |||||| ||||||| || Sbjct 36914 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCA 36855 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 ||||||||| ||| || || || | ||||| || || ||||||||||| ||||||||| Sbjct 36854 TTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 36795 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || ||||| || || || ||||| | || || |||||| ||||| ||| | || Sbjct 36794 TCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGT 36735 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 ||||| || || ||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct 36734 TACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGT 36675 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 ||| | |||||||| || || || ||||||||||| | | ||||||||| |||| Sbjct 36674 CGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCT 36615 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || || || | || | ||||| || || | ||| | | || |||||||||||| Sbjct 36614 GCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAAC 36555 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 | ||||| ||||||||||||||||||||||| ||| | | ||| | | || Sbjct 36554 TTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACT 36495 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| |||| | | ||| | || ||| ||||||||||||| ||||| ||| | || || Sbjct 36494 TGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCT 36435 Query 172780 CACAACTTCCCATTAGACCTTGCTTCTGCAGA 172811 |||||||||||||||||| | ||||||| ||| Sbjct 36434 CACAACTTCCCATTAGACTTAGCTTCTGTAGA 36403 Score = 699 bits (774), Expect = 0.0 Identities = 750/992 (76%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 || || || ||| | || |||||| | ||| | | || | |||||||||||||| | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || || | ||||| || | ||||| | | ||||| ||||| ||| Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 108373 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || |||||||| || ||| | || |||||| | |||||||| ||||| ||||||||| Sbjct 108374 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 108433 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 |||||||||||||| || | || |||| |||||||| ||||| ||||||||||| || Sbjct 108434 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 108493 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| || | |||| || ||||| ||||| ||||||||||| || || | | Sbjct 108494 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 108553 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | ||||||| | | ||| | || | |||||||| | |||||||||| || ||| | Sbjct 108554 TGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 108613 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 ||||||||| | || ||||| ||||| || || ||||| || ||| | || ||| ||| Sbjct 108614 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCA 108673 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || ||| |||| || ||||| ||||||||||||||||| |||||||| Sbjct 108674 GTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 108733 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| |||||||| ||| |||| |||||||| ||||| |||||| ||||||| || Sbjct 108734 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCA 108793 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 ||||||||| ||| || || || | ||||| || || ||||||||||| ||||||||| Sbjct 108794 TTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 108853 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || ||||| || || || ||||| | || || |||||| ||||| ||| | || Sbjct 108854 TCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGT 108913 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 ||||| || || ||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct 108914 TACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGT 108973 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 ||| | |||||||| || || || ||||||||||| | | ||||||||| |||| Sbjct 108974 CGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCT 109033 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || || || | || | ||||| || || | ||| | | || |||||||||||| Sbjct 109034 GCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAAC 109093 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 | ||||| ||||||||||||||||||||||| ||| | | ||| | | || Sbjct 109094 TTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACT 109153 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| |||| | | ||| | || ||| ||||||||||||| ||||| ||| | || || Sbjct 109154 TGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCT 109213 Query 172780 CACAACTTCCCATTAGACCTTGCTTCTGCAGA 172811 |||||||||||||||||| | ||||||| ||| Sbjct 109214 CACAACTTCCCATTAGACTTAGCTTCTGTAGA 109245 Score = 522 bits (578), Expect = 3e-143 Identities = 745/1044 (71%), Gaps = 21/1044 (2%) Strand=Plus/Plus Query 172947 TTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 173006 ||||||||| | | ||| ||||||||| ||| ||||| || || | || ||||| Sbjct 121698 TTGGTTTGACGATTGTGATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTC 121757 Query 173007 TGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTAC 173066 |||||| | | |||||||||| || || | | ||||||||||| || || || Sbjct 121758 AGGTCTTCTTTTATTACCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAAC 121817 Query 173067 CTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTT 173126 || ||||| || ||||| ||||||||| | ||| |||| || | ||||| ||||| Sbjct 121818 ATTTGTTACTTCTTGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 121877 Query 173127 TTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTG 173186 ||||| || ||||| || || || | || |||| |||| | | | || |||| Sbjct 121878 CTTAACTGCTGCAGTTTCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTG 121937 Query 173187 GGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTT 173246 |||||||||||| |||||| || |||||||| ||| | || || |||||| || Sbjct 121938 GGGACCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTT 121997 Query 173247 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGC 173306 ||||||| | ||||| | ||||| | || ||||| ||| | ||||| ||||| || || Sbjct 121998 TGTAGCACTGCATGGTGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGC 122057 Query 173307 AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTT 173366 | | ||| | | | || || |||||| | || |||||||| || || || || Sbjct 122058 ACGTTCAGTAAACTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATT 122117 Query 173367 CACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATT 173426 | | |||||||| ||||| |||| || ||||||||||||| ||| || Sbjct 122118 TGTTTCTGTATTTTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTT 122177 Query 173427 CGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATT 173486 ||||| || || || || |||| |||||||||| | ||||||||||||||| ||| | Sbjct 122178 TGGTGTTGCCGCTATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACT 122237 Query 173487 GAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCAT 173546 || ||||| ||||||||||| ||||| || | |||||| || || ||||||| || Sbjct 122238 TAACCCATTCCACATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTAT 122297 Query 173547 TCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAA 173606 ||||||||| ||||| |||| | | | | | || || || ||| ||| Sbjct 122298 TCATGGTGCTACAGT--AGAAAATACTCTTT---------TC-GAAGATGGTGATGGT-- 122343 Query 173607 GATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTAT 173666 | | || |||| ||| | |||||| | ||||| || | ||||||||||| ||| Sbjct 122344 GCT--AA--CACA---TTCCGTGCATTTAACCCTACGCAAGCTGAAGAAACTTACTCTAT 122396 Query 173667 GATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATT 173726 | | ||||| || |||||||||||||| || |||||| | || |||||||||||| | | Sbjct 122397 GGTAACAGCTAATAGATTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTG 122456 Query 173727 TTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTAT 173786 ||||||||| | ||||| || || ||||| | ||| | |||| || | || ||| | Sbjct 122457 GTTACACTTCTTTATGTTATTTGTTCCTGTGACAGGTCTTTGGATGTCTGCTATTGGTGT 122516 Query 173787 CGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGC 173846 |||||| | || |||||| | | || |||||||| || || |||||||| | || || Sbjct 122517 TGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTTCGTTTCACAAGAGATTCGTGCTGC 122576 Query 173847 AGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAG 173906 ||||||||||| || || |||||||||||||| || | ||||||||||||||||| | Sbjct 122577 TGAAGATCCAGAATTTGAAACTTTCTACACTAAAAACCTTCTTCTTAATGAAGGTATCCG 122636 Query 173907 AGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTT 173966 || |||||| | | ||| || ||||| || ||| ||||| ||||||||||| || Sbjct 122637 TGCTTGGATGGCTGCACAAGACCAGCCACACGAACGCTTAGTATTCCCAGAAGAAGTATT 122696 Query 173967 ACCAAGAGGTAACGCACTTTAAAT 173990 ||| | |||||||| || ||||| Sbjct 122697 ACCTCGTGGTAACGCTCTATAAAT 122720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588001803699200