Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq6720 679 0.0 >seq6720 Length=135362 Score = 679 bits (752), Expect = 0.0 Identities = 740/989 (75%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 167088 TTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTG 167147 ||||| || ||| | || ||| | |||||| | || ||||||||||||| || | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 167148 ATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCC 167206 ||||||||| || | |||| || |||||| ||||| |||| |||| ||| ||||| Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 167207 TCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 167266 ||| || || |||||||||||||| || |||||| ||||||| | | || |||||||| Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 167267 CATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCAT 167326 ||||||||||||||| || | ||| | ||||| || || |||||||||||||| || || Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 167327 CTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGT 167386 |||||||| || | | ||||||||||| ||||| |||||||||| |||| | | || Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 167387 TTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 167446 || ||||||| | | || | | || |||||||||||||||||||| |||||||| Sbjct 37095 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 37036 Query 167447 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGC 167506 | | ||||||||||| |||||||||||||| ||||| |||||||| ||||| ||| |||| Sbjct 37035 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 36976 Query 167507 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTAT 167566 |||||| | |||| || |||| ||||||||||||||||| | |||||| | ||||| Sbjct 36975 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 36916 Query 167567 CTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 167626 ||||||||| ||||||| |||| | || |||||||| ||||||||||| | |||||||| Sbjct 36915 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 36856 Query 167627 CTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGG 167686 ||||| ||| | || |||||||| ||||| || ||||| | ||| || |||||||| Sbjct 36855 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 36796 Query 167687 TTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGG 167746 ||| | || || || || | | |||||||| || |||| || || ||| | || Sbjct 36795 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 36736 Query 167747 TTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGG 167806 |||||| || ||||| ||||||||||| || |||||||| ||||| || |||||||| || Sbjct 36735 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 36676 Query 167807 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGC 167866 ||| | ||||||||||||||||| ||||||||||| || || | ||||||||||| || Sbjct 36675 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 36616 Query 167867 AGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAA 167926 || ||||| || | | || |||| |||||| Sbjct 36615 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 36556 Query 167927 CCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTAC 167986 | | ||||| |||||||||||||| || | ||||| ||| || | || Sbjct 36555 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 36496 Query 167987 TTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 168046 |||||| ||| | ||||||||||| | ||||||||||| |||||||| ||||| || Sbjct 36495 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 36436 Query 168047 TCACAACTTCCCTCTCGACCTTGCTGCTG 168075 |||||||||||| | ||| | ||| ||| Sbjct 36435 TCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 679 bits (752), Expect = 0.0 Identities = 740/989 (75%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 167088 TTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTG 167147 ||||| || ||| | || ||| | |||||| | || ||||||||||||| || | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 167148 ATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCC 167206 ||||||||| || | |||| || |||||| ||||| |||| |||| ||| ||||| Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 167207 TCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 167266 ||| || || |||||||||||||| || |||||| ||||||| | | || |||||||| Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 167267 CATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCAT 167326 ||||||||||||||| || | ||| | ||||| || || |||||||||||||| || || Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 167327 CTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGT 167386 |||||||| || | | ||||||||||| ||||| |||||||||| |||| | | || Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 167387 TTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 167446 || ||||||| | | || | | || |||||||||||||||||||| |||||||| Sbjct 108553 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 108612 Query 167447 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGC 167506 | | ||||||||||| |||||||||||||| ||||| |||||||| ||||| ||| |||| Sbjct 108613 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 108672 Query 167507 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTAT 167566 |||||| | |||| || |||| ||||||||||||||||| | |||||| | ||||| Sbjct 108673 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 108732 Query 167567 CTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 167626 ||||||||| ||||||| |||| | || |||||||| ||||||||||| | |||||||| Sbjct 108733 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 108792 Query 167627 CTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGG 167686 ||||| ||| | || |||||||| ||||| || ||||| | ||| || |||||||| Sbjct 108793 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 108852 Query 167687 TTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGG 167746 ||| | || || || || | | |||||||| || |||| || || ||| | || Sbjct 108853 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 108912 Query 167747 TTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGG 167806 |||||| || ||||| ||||||||||| || |||||||| ||||| || |||||||| || Sbjct 108913 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 108972 Query 167807 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGC 167866 ||| | ||||||||||||||||| ||||||||||| || || | ||||||||||| || Sbjct 108973 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 109032 Query 167867 AGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAA 167926 || ||||| || | | || |||| |||||| Sbjct 109033 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 109092 Query 167927 CCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTAC 167986 | | ||||| |||||||||||||| || | ||||| ||| || | || Sbjct 109093 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 109152 Query 167987 TTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 168046 |||||| ||| | ||||||||||| | ||||||||||| |||||||| ||||| || Sbjct 109153 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 109212 Query 168047 TCACAACTTCCCTCTCGACCTTGCTGCTG 168075 |||||||||||| | ||| | ||| ||| Sbjct 109213 TCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 504 bits (558), Expect = 8e-138 Identities = 715/1005 (71%), Gaps = 8/1005 (1%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | | || ||||| |||||||| |||||||| || |||||| | || Sbjct 121714 GATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATTA 121773 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| |||| | || |||||| |||||||||| | || || || |||| Sbjct 121774 CCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTGG 121833 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 || || || || || |||| ||| || | || || ||||| | ||||| |||||| Sbjct 121834 TACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTT 121893 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 ||||||||| | ||||| ||||||| | | || | ||||| ||||| || ||| Sbjct 121894 TCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCAA 121953 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 || || || | ||||||||| | || || | ||| ||||||| || || || || Sbjct 121954 GGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGGT 122013 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA-- 168852 ||||| | | |||| ||||| ||| | ||||| |||||| | |||||| || ||| Sbjct 122014 GCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGT----TCAGTAAA 122069 Query 168853 --TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 168910 | ||||| || || || ||||| ||||||| || || ||||| |||||| || || Sbjct 122070 CTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATT 122129 Query 168911 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGC 168970 | | || |||||| | |||||||| ||||||| ||||| || ||| || || | || Sbjct 122130 TTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGC 122189 Query 168971 AATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCA 169030 || ||||| || | | ||| | ||||| ||||| ||||||||||| || ||||| || Sbjct 122190 TATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCA 122249 Query 169031 TATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTAC 169090 |||||||| || || ||| |||| || | || | | | ||| |||||||||| ||| Sbjct 122250 CATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTAC 122309 Query 169091 AGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAG 169150 |||||| |||||||| | |||||||||| || || || ||| |||||| || Sbjct 122310 AGTAGAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCC 122369 Query 169151 CACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 169210 || || | || || || || || ||||| || || || | |||||||| || || || Sbjct 122370 TACGCAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTT 122429 Query 169211 TGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 169270 |||| | || || || || | ||||| || ||||||||| | ||||||||||| | Sbjct 122430 TGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGAC 122489 Query 169271 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 169330 |||||||||| | | || ||| || | ||| | ||||| ||| | |||||||| || Sbjct 122490 AGGTCTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGA 122549 Query 169331 CTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAA 169390 ||| ||||| |||||||| | || || ||||||||||| ||||| || |||||||| || Sbjct 122550 CTTCGTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAA 122609 Query 169391 GAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGA 169450 ||| | || | || |||||| | ||||| ||| | || | || || || || || Sbjct 122610 AAACCTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGA 122669 Query 169451 GAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 ||| || ||||| || |||||| | || || ||||| || || Sbjct 122670 ACGCTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/70 (89%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 22473 TTTGGGGAA-TTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTC 22531 ||| |||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct 40260 TTTAGGGATCTTAGCTCAGTTGGTAGAGCACCTGCTTTGCACGCAGGGGGTCAGGAGTTC 40319 Query 22532 GAGTCTCCTA 22541 || ||||||| Sbjct 40320 GACTCTCCTA 40329 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/70 (89%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 22473 TTTGGGGAA-TTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTC 22531 ||| |||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct 105388 TTTAGGGATCTTAGCTCAGTTGGTAGAGCACCTGCTTTGCACGCAGGGGGTCAGGAGTTC 105329 Query 22532 GAGTCTCCTA 22541 || ||||||| Sbjct 105328 GACTCTCCTA 105319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560560908928000