Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq6720 789 0.0 >seq6720 Length=135362 Score = 789 bits (874), Expect = 0.0 Identities = 770/989 (78%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||||||||| | ||||| ||||| || ||| | ||| | |||||||| ||||| | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| |||||| | | ||||||| || ||||| | | |||||||| || ||| Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 37275 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || |||||||| || ||| | ||||||||| ||||||||||| | || ||||||||| Sbjct 37274 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 37215 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 ||||||||||||||| || | |||| || ||||||||||| | ||||||||||| || Sbjct 37214 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 37155 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| || | | ||||| ||| | ||||| ||||| |||| |||| | | | Sbjct 37154 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 37095 Query 215594 TTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGA 215653 | ||||||| | | ||| || | | ||| || | ||||||||||||||||| | Sbjct 37094 TGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 37035 Query 215654 TTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCA 215713 ||||||||| | ||||||||||||||||||||||| || || ||| ||||||| |||| Sbjct 37034 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCA 36975 Query 215714 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATC 215773 |||||| | | || ||| |||| || |||||||||||||||| |||||| | || ||| Sbjct 36974 GTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 36915 Query 215774 TCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCA 215833 ||||| || ||||||| |||| | || ||||| ||||||||||||||| | ||||||||| Sbjct 36914 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCA 36855 Query 215834 TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGT 215893 ||||||||||||||||| |||||||| || ||||||||||| ||||| || ||||||||| Sbjct 36854 TTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 36795 Query 215894 TCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGT 215953 ||| | || || || || ||||| | || || ||||| | |||||| ||| | ||| Sbjct 36794 TCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGT 36735 Query 215954 TACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGT 216013 ||||| || || ||||| || || || ||||||||||||||||||||||||||||||||| Sbjct 36734 TACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGT 36675 Query 216014 CGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCA 216073 || | ||||||||||||||||| ||||||||||| | | ||||||||| | || Sbjct 36674 CGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCT 36615 Query 216074 GCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAAC 216133 || | || || || || || ||| ||||| | ||| | ||||||||||| |||||| Sbjct 36614 GCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAAC 36555 Query 216134 CTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACT 216193 | ||||| |||||||||||||| || || || || || ||| || | ||| Sbjct 36554 TTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACT 36495 Query 216194 TGGGCAGACGTTCTTAACAGAGCAGGACTT-GGTATGGAAGTAATGCACGAGCGTAACGC 216252 ||||| ||| | | ||| | || |||| |||||||||||||||||||| |||||||| Sbjct 36494 TGGGCTGACATCATCAACCGTGC-TAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 36436 Query 216253 TCACAACTTCCCATTAGACTTGGCTGCTG 216281 ||||||||||||||||||||| ||| ||| Sbjct 36435 TCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 789 bits (874), Expect = 0.0 Identities = 770/989 (78%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||||||||| | ||||| ||||| || ||| | ||| | |||||||| ||||| | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| |||||| | | ||||||| || ||||| | | |||||||| || ||| Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCT 108373 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || |||||||| || ||| | ||||||||| ||||||||||| | || ||||||||| Sbjct 108374 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAAC 108433 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 ||||||||||||||| || | |||| || ||||||||||| | ||||||||||| || Sbjct 108434 ATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATT 108493 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| || | | ||||| ||| | ||||| ||||| |||| |||| | | | Sbjct 108494 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 108553 Query 215594 TTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGA 215653 | ||||||| | | ||| || | | ||| || | ||||||||||||||||| | Sbjct 108554 TGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 108613 Query 215654 TTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCA 215713 ||||||||| | ||||||||||||||||||||||| || || ||| ||||||| |||| Sbjct 108614 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCA 108673 Query 215714 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATC 215773 |||||| | | || ||| |||| || |||||||||||||||| |||||| | || ||| Sbjct 108674 GTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 108733 Query 215774 TCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCA 215833 ||||| || ||||||| |||| | || ||||| ||||||||||||||| | ||||||||| Sbjct 108734 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCA 108793 Query 215834 TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGT 215893 ||||||||||||||||| |||||||| || ||||||||||| ||||| || ||||||||| Sbjct 108794 TTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 108853 Query 215894 TCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGT 215953 ||| | || || || || ||||| | || || ||||| | |||||| ||| | ||| Sbjct 108854 TCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGT 108913 Query 215954 TACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGT 216013 ||||| || || ||||| || || || ||||||||||||||||||||||||||||||||| Sbjct 108914 TACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGT 108973 Query 216014 CGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCA 216073 || | ||||||||||||||||| ||||||||||| | | ||||||||| | || Sbjct 108974 CGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCT 109033 Query 216074 GCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAAC 216133 || | || || || || || ||| ||||| | ||| | ||||||||||| |||||| Sbjct 109034 GCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAAC 109093 Query 216134 CTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACT 216193 | ||||| |||||||||||||| || || || || || ||| || | ||| Sbjct 109094 TTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACT 109153 Query 216194 TGGGCAGACGTTCTTAACAGAGCAGGACTT-GGTATGGAAGTAATGCACGAGCGTAACGC 216252 ||||| ||| | | ||| | || |||| |||||||||||||||||||| |||||||| Sbjct 109154 TGGGCTGACATCATCAACCGTGC-TAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 109212 Query 216253 TCACAACTTCCCATTAGACTTGGCTGCTG 216281 ||||||||||||||||||||| ||| ||| Sbjct 109213 TCACAACTTCCCATTAGACTTAGCTTCTG 109241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745019013145600