Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq6720 794 0.0 seq6719 93.3 5e-14 >seq6720 Length=135362 Score = 794 bits (880), Expect = 0.0 Identities = 771/989 (78%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 || || |||||| | || || || | || ||| | || |||||||||| |||||| | Sbjct 37394 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 37335 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| | || | || || |||||| ||||| | | ||| | ||||| || Sbjct 37334 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 ||| || |||||||| |||||||| || || || ||||||| | | || |||||||| Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 |||||||||||||||| || |||| | || |||||||| |||||||||||||||||||| Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGT 182092 ||||||||||| || | || |||||| | || ||||||||||||| |||| | | || Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 182093 TTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAACTTTCTTACCG 182152 || ||||||| | | || | | |||||||| ||||||||||||||||||||||| Sbjct 37095 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 37036 Query 182153 CTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGC 182212 |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||| |||| Sbjct 37035 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 36976 Query 182213 TGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAAT 182272 ||||||||| |||| || |||| |||||||| ||||| |||| ||||| | || || Sbjct 36975 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 36916 Query 182273 CTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCC 182332 ||| || || ||||||| ||| | || ||||||||||||||||||||| | ||||| || Sbjct 36915 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 36856 Query 182333 CTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGG 182392 ||||||||||| ||||| || |||||||| ||||||||| | || || |||||||| Sbjct 36855 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 36796 Query 182393 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGG 182452 ||| || || || || ||| | ||||||| || ||||| | || || ||| | || Sbjct 36795 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 36736 Query 182453 TTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGG 182512 |||||| || ||||||||||||||||| || |||||||| || || || || ||||| || Sbjct 36735 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 36676 Query 182513 TCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 182572 |||||| ||||||||||||||||||||||||||||| ||||| || ||||||||| | || Sbjct 36675 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 36616 Query 182573 TGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAA 182632 ||| ||||| || | | || |||||||| || | ||| | || || ||||||||||| Sbjct 36615 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 36556 Query 182633 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACAC 182692 | | ||||| |||||||||||||| || | ||||| || |||||||| | ||||| Sbjct 36555 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 36496 Query 182693 TTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 182752 |||||| || | | ||||||||| | ||||||||||| ||||| || |||||||| Sbjct 36495 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 36436 Query 182753 ACACAACTTCCCACTAGATCTTGCTGCTG 182781 |||||||||||| |||| | ||| ||| Sbjct 36435 TCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 794 bits (880), Expect = 0.0 Identities = 771/989 (78%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 || || |||||| | || || || | || ||| | || |||||||||| |||||| | Sbjct 108254 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTA 108313 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| | || | || || |||||| ||||| | | ||| | ||||| || Sbjct 108314 ATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 ||| || |||||||| |||||||| || || || ||||||| | | || |||||||| Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 |||||||||||||||| || |||| | || |||||||| |||||||||||||||||||| Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGT 182092 ||||||||||| || | || |||||| | || ||||||||||||| |||| | | || Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 182093 TTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAACTTTCTTACCG 182152 || ||||||| | | || | | |||||||| ||||||||||||||||||||||| Sbjct 108553 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 108612 Query 182153 CTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGC 182212 |||||||||||||| ||||||||||| || ||||| |||||||| ||||| ||| |||| Sbjct 108613 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 108672 Query 182213 TGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAAT 182272 ||||||||| |||| || |||| |||||||| ||||| |||| ||||| | || || Sbjct 108673 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 108732 Query 182273 CTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCC 182332 ||| || || ||||||| ||| | || ||||||||||||||||||||| | ||||| || Sbjct 108733 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 108792 Query 182333 CTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGG 182392 ||||||||||| ||||| || |||||||| ||||||||| | || || |||||||| Sbjct 108793 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 108852 Query 182393 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGG 182452 ||| || || || || ||| | ||||||| || ||||| | || || ||| | || Sbjct 108853 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 108912 Query 182453 TTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGG 182512 |||||| || ||||||||||||||||| || |||||||| || || || || ||||| || Sbjct 108913 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 108972 Query 182513 TCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 182572 |||||| ||||||||||||||||||||||||||||| ||||| || ||||||||| | || Sbjct 108973 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 109032 Query 182573 TGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAA 182632 ||| ||||| || | | || |||||||| || | ||| | || || ||||||||||| Sbjct 109033 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 109092 Query 182633 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACAC 182692 | | ||||| |||||||||||||| || | ||||| || |||||||| | ||||| Sbjct 109093 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 109152 Query 182693 TTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 182752 |||||| || | | ||||||||| | ||||||||||| ||||| || |||||||| Sbjct 109153 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 109212 Query 182753 ACACAACTTCCCACTAGATCTTGCTGCTG 182781 |||||||||||| |||| | ||| ||| Sbjct 109213 TCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 581 bits (644), Expect = 4e-161 Identities = 734/1006 (73%), Gaps = 8/1006 (1%) Strand=Plus/Plus Query 183192 TGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCT 183251 |||||||||| | | || || ||||| ||||| || ||||| || || || | | Sbjct 121713 TGATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATT 121772 Query 183252 TCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTG 183311 || ||| ||| |||| | || |||||| ||||||| ||| | |||||||| ||| Sbjct 121773 ACCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTG 121832 Query 183312 GTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGT 183371 ||| || ||||| | || |||| || | |||||| |||||| | || || || || Sbjct 121833 GTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGT 121892 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 ||||| || || || ||||| ||||||| | | || ||||||| ||||| |||| Sbjct 121893 TTCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCA 121952 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 ||| |||||| ||| ||||| ||| | || || | |||| |||||| ||||| || || Sbjct 121953 AGGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGG 122012 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTA- 183550 ||| |||| | | |||||||| ||| | || || |||||| |||| || || | ||| Sbjct 122013 TGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACG-TTCA---GTAA 122068 Query 183551 ---TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTAT 183607 | ||||| || || || ||||| ||||||| || |||||||| ||||| ||||| Sbjct 122069 ACTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTAT 122128 Query 183608 TCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAG 183667 | | || || || | ||||| ||| |||||||| || |||||||| || || || | Sbjct 122129 TTTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCG 122188 Query 183668 CAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCC 183727 | || || | || | || ||| | || ||||||||||||||||| | ||||| |||| Sbjct 122189 CTATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCC 122248 Query 183728 ATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCA 183787 | |||||||||||||||||| | |||| | || ||| | ||||||| ||||||| | Sbjct 122249 ACATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTA 122308 Query 183788 CAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATT 183847 ||||||| ||||| | | |||||||| || || ||||||||| |||||| | Sbjct 122309 CAGTAGAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACC 122368 Query 183848 CCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCT 183907 | || |||| ||||| || || |||||||| ||||| ||| | |||||||||||||| | Sbjct 122369 CTACGCAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTT 122428 Query 183908 TCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCA 183967 | || || || ||| || || |||||||| |||||||||||||| ||||||||||| | Sbjct 122429 TTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGA 122488 Query 183968 TGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATG 184027 ||||||||| | ||| ||||||| | | || | |||||||| | |||||||| | Sbjct 122489 CAGGTCTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACG 122548 Query 184028 ATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAA 184087 | || || |||||||| | || || ||||||||||||||||| || |||||||| | Sbjct 122549 ACTTCGTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTA 122608 Query 184088 AGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATG 184147 | ||| | |||||||||||||| | ||||| ||| | || | || || ||||| | Sbjct 122609 AAAACCTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACG 122668 Query 184148 AGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCT 184193 | || |||| ||||| || ||||||||| | || || ||||| Sbjct 122669 AACGCTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 >seq6719 Length=93840 Score = 93.3 bits (102), Expect = 5e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 20486 ATGGCGGAATTGGTAGACGCGCTAGGTTTAGGTTCTAGTGAGGTAACTCGTGGAGGTTCA 20545 ||||||||||||||||||||| ||||||||||||||||||| | | ||||| ||||||| Sbjct 38479 ATGGCGGAATTGGTAGACGCGTTAGGTTTAGGTTCTAGTGAATTTATTCGTGCAGGTTCA 38420 Query 20546 AGTCCTCTT 20554 |||||| || Sbjct 38419 AGTCCTGTT 38411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611644617536000