Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq6720 749 0.0 >seq6720 Length=135362 Score = 749 bits (830), Expect = 0.0 Identities = 768/996 (77%), Gaps = 14/996 (1%) Strand=Plus/Minus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 |||||| |||||| | ||||| || | |||||| | || |||||||||||||||| | Sbjct 37395 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 37336 Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTT-ATTACTGCATTCATCGCTGCTC 164881 |||||||| || || | | |||||| | ||| || |||| | |||||||| |||| Sbjct 37335 AATGATCCCTTGCTTATTAACAGCTACA-TCTGTATTCATTATCGGCTTCATCGCAGCTC 37277 Query 164882 CCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACA 164941 | || || || || |||||||| ||||| || || | |||||| || | |||||||||| Sbjct 37276 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 37217 Query 164942 ACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTA 165001 ||||||||||||||||| | | || | |||||||||||||| ||||||||||| || | Sbjct 37216 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 37157 Query 165002 TTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTG 165061 ||||||||||||| | | || || ||||| |||||||||||||||||||| || | | Sbjct 37156 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 37097 Query 165062 TCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACC 165121 | | ||||||| | | ||||| || | ||||||||||||||||||||||| ||||||| Sbjct 37096 TTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 37037 Query 165122 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCG 165181 | | ||||||||||||||||| || || || || || || || |||||||| | | Sbjct 37036 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTG 36977 Query 165182 CAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTA 165241 |||| ||| | |||| || |||| ||||| ||||||||||||||||||| | |||| Sbjct 36976 CAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 36917 Query 165242 TCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATC 165301 ||||||||||||| |||| ||| |||| |||||||| || || |||||| | ||||| | Sbjct 36916 TCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACC 36857 Query 165302 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 165361 | ||||||||| | || |||||||| ||||| ||||| || | ||||| |||||||| | Sbjct 36856 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 36797 Query 165362 GAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACG 165421 | | || ||||| ||| | |||| || || ||||||| || | ||| | | Sbjct 36796 GTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAG 36737 Query 165422 GTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCG 165481 |||| || ||||| |||||||||||||| || |||||||| ||||| ||||| ||||| | Sbjct 36736 GTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTG 36677 Query 165482 GTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCG 165541 ||||| | || |||||||||||||| |||||||| || ||||| | ||||||||| | | Sbjct 36676 GTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 36617 Query 165542 CAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC-ATGGCATTC 165600 | || ||||| ||| | | || |||||||||||| | ||| ||| || | ||||||||| Sbjct 36616 CTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGT-TTATCAACTATGGCATTC 36558 Query 165601 AACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCT 165660 ||| | ||||| |||||||||||||| || |||||||| || |||| || | | Sbjct 36557 AACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGAT--TC---ACAAGGTCGTGTAT 36503 Query 165661 -----ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGC 165715 |||||||||||| | | ||||||||| | ||||||||||| ||||| || | Sbjct 36502 TAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAAC 36443 Query 165716 GTAACGCTCACAACTTCCCCCTCGACCTCGCTGCTG 165751 ||||||||||||||||||| | ||| | ||| ||| Sbjct 36442 GTAACGCTCACAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 749 bits (830), Expect = 0.0 Identities = 768/996 (77%), Gaps = 14/996 (1%) Strand=Plus/Plus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 |||||| |||||| | ||||| || | |||||| | || |||||||||||||||| | Sbjct 108253 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 108312 Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTC 164881 |||||||| || || | | ||||| || ||| || |||| | |||||||| |||| Sbjct 108313 AATGATCCCTTGCTTATTAACAGCTAC-ATCTGTATTCATTATCGGCTTCATCGCAGCTC 108371 Query 164882 CCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACA 164941 | || || || || |||||||| ||||| || || | |||||| || | |||||||||| Sbjct 108372 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACA 108431 Query 164942 ACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTA 165001 ||||||||||||||||| | | || | |||||||||||||| ||||||||||| || | Sbjct 108432 ACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAA 108491 Query 165002 TTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTG 165061 ||||||||||||| | | || || ||||| |||||||||||||||||||| || | | Sbjct 108492 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 108551 Query 165062 TCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACC 165121 | | ||||||| | | ||||| || | ||||||||||||||||||||||| ||||||| Sbjct 108552 TTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 108611 Query 165122 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCG 165181 | | ||||||||||||||||| || || || || || || || |||||||| | | Sbjct 108612 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTG 108671 Query 165182 CAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTA 165241 |||| ||| | |||| || |||| ||||| ||||||||||||||||||| | |||| Sbjct 108672 CAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 108731 Query 165242 TCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATC 165301 ||||||||||||| |||| ||| |||| |||||||| || || |||||| | ||||| | Sbjct 108732 TCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACC 108791 Query 165302 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 165361 | ||||||||| | || |||||||| ||||| ||||| || | ||||| |||||||| | Sbjct 108792 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 108851 Query 165362 GAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACG 165421 | | || ||||| ||| | |||| || || ||||||| || | ||| | | Sbjct 108852 GTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAG 108911 Query 165422 GTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCG 165481 |||| || ||||| |||||||||||||| || |||||||| ||||| ||||| ||||| | Sbjct 108912 GTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTG 108971 Query 165482 GTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCG 165541 ||||| | || |||||||||||||| |||||||| || ||||| | ||||||||| | | Sbjct 108972 GTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 109031 Query 165542 CAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGC-ACCATGGCATTC 165600 | || ||||| ||| | | || |||||||||||| | ||| ||| | || ||||||||| Sbjct 109032 CTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGT-TTATCAACTATGGCATTC 109090 Query 165601 AACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCT 165660 ||| | ||||| |||||||||||||| || |||||||| || |||| || | | Sbjct 109091 AACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGAT--TC---ACAAGGTCGTGTAT 109145 Query 165661 -----ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGC 165715 |||||||||||| | | ||||||||| | ||||||||||| ||||| || | Sbjct 109146 TAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAAC 109205 Query 165716 GTAACGCTCACAACTTCCCCCTCGACCTCGCTGCTG 165751 ||||||||||||||||||| | ||| | ||| ||| Sbjct 109206 GTAACGCTCACAACTTCCCATTAGACTTAGCTTCTG 109241 Score = 551 bits (610), Expect = 6e-152 Identities = 727/1008 (72%), Gaps = 0/1008 (0%) Strand=Plus/Plus Query 166172 TGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCT 166231 ||| |||||| | | ||| ||||| |||||||| |||||||| || |||||| | | Sbjct 121713 TGATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCAGGTCTTCTTTTATT 121772 Query 166232 TCCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTG 166291 || ||| ||| |||| | || |||||| | |||||||| || || || || ||| Sbjct 121773 ACCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACATTTGTTACTTCTTG 121832 Query 166292 GTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGT 166351 ||| || ||||| | |||| ||| | || ||| ||||| | ||||| ||||| Sbjct 121833 GTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGT 121892 Query 166352 TTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCA 166411 ||| ||||||||| | ||||| ||||||| || | || | ||||| ||||| ||||| Sbjct 121893 TTCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGGGGACCTGAAGCTCA 121952 Query 166412 AGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGG 166471 ||| || || | ||||| ||| | || || | ||| | ||||| || || || || Sbjct 121953 AGGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTAGCACTGCATGG 122012 Query 166472 TGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCGTCTAGTAGGTAT 166531 |||||||| |||||||||| ||| | || || |||||||| || ||| |||| | Sbjct 122013 TGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCACGTTCAGTAAACTT 122072 Query 166532 TCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCT 166591 ||||| || || ||||| ||||| |||| || |||||||| || ||| ||| ||| | Sbjct 122073 ACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTTGTTTCTGTATTTTT 122132 Query 166592 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 166651 || |||||| | |||||||| ||||||| ||||| || ||| || || | || || Sbjct 122133 AATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTTGGTGTTGCCGCTAT 122192 Query 166652 CTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATAT 166711 ||||| || || | ||| | ||||| ||||||||||||||||| |||||||| || || Sbjct 122193 TTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCCACAT 122252 Query 166712 GATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGT 166771 |||||| || || ||| || | |||| || | | | ||| || ||||||| |||||| Sbjct 122253 GATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATTCATGGTGCTACAGT 122312 Query 166772 AGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTAC 166831 ||| || ||||| | |||||||||| || || || ||| ||||| || |||| Sbjct 122313 AGAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGTGCATTTAACCCTAC 122372 Query 166832 TCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGG 166891 |||| |||||||| || || ||||| ||||| || | | ||||| || || || || Sbjct 122373 GCAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGGTCACAAATTTTTGG 122432 Query 166892 TATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 166951 | | || ||| || || | ||||| || ||||||||| | ||||||||||| | || Sbjct 122433 TGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTTGTTCCTGTGACAGG 122492 Query 166952 TCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 167011 ||| |||| | | || ||| || | ||| | ||||| ||| | |||||||| ||||| Sbjct 122493 TCTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTACGTGCTTACGACTT 122552 Query 167012 TGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAA 167071 ||||| ||||| | | || || || ||||| || |||||||| ||||| || || || Sbjct 122553 CGTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAA 122612 Query 167072 CATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAG 167131 | |||| | ||||| ||||| ||| |||||||||| | || || || || || | Sbjct 122613 CCTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGACCAGCCACACGAACG 122672 Query 167132 TTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAAAT 167179 || |||||||| ||||| || | ||| | ||||||||||| ||||| Sbjct 122673 CTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCTATAAAT 122720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563613452492800