Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq6720 675 0.0 >seq6720 Length=135362 Score = 675 bits (748), Expect = 0.0 Identities = 718/944 (76%), Gaps = 6/944 (1%) Strand=Plus/Minus Query 169732 GGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACC---TGCTTTATC 169788 |||||||||||||| || |||||||| || ||||| |||| || | | | ||||| Sbjct 37352 GGTTGGTTCGGTGTGTTAATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATC 37293 Query 169789 GTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGT 169848 | |||| |||||||||||| || || || |||||||| ||| | || || || | ||| Sbjct 37292 G--GCTT-CATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGT 37236 Query 169849 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 169908 || || | || ||||||||||||||||||||||| || | || | || ||||||||| Sbjct 37235 TCTTTATTATACGGTAACAACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATC 37176 Query 169909 GGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGT 169968 ||||| |||||||| || ||||||||||| || || |||| |||||||| || |||||| Sbjct 37175 GGTCTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGT 37116 Query 169969 GGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGA 170028 |||||||| |||||| | | | ||||||| | | || | | | ||||||||| | Sbjct 37115 GGTCCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGT 37056 Query 170029 CAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCT 170088 |||||||||| || |||||||||||||||||||||||||||||||| || || || ||| Sbjct 37055 GAGTGGGAACTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCT 36996 Query 170089 CCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCA 170148 ||||| | || ||| || ||||||||| | || || |||| || || |||||||| Sbjct 36995 CCAGTAGCTGCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCT 36936 Query 170149 GACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAG 170208 || || |||||| |||||||||| ||||| || ||||||||| ||||||||||||| ||| Sbjct 36935 GATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAG 36876 Query 170209 CACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCA 170268 ||||||||| | |||||||||||||| ||| ||| ||||||||| | || || || || Sbjct 36875 CACAACATTTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCA 36816 Query 170269 CTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGAT 170328 | |||||||| |||||||||||| | ||||| || || ||||| | || || || || Sbjct 36815 TTATTCTCAGCTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAA 36756 Query 170329 AACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTT 170388 ||||| || ||| | || |||||||| || ||||||||||| || |||||||| || Sbjct 36755 AACGAATCTGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTA 36696 Query 170389 GCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGT 170448 || ||||| || ||||||||| | | ||||||||||| || || ||||| |||| Sbjct 36695 GCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGT 36636 Query 170449 AGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGT 170508 | ||||||||| | ||| | | || ||| | ||||| ||||| ||| | | ||| Sbjct 36635 TCATTACACTTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGT 36576 Query 170509 ATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGA 170568 | | || |||||||| ||| | || || || ||||||||||| ||| | || ||| | Sbjct 36575 TTATCAACTATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCA 36516 Query 170569 TCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAA 170628 ||| ||| | || ||||| ||| | | ||| | || ||| ||||||||||| Sbjct 36515 CAAGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAA 36456 Query 170629 GTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGC 170672 |||||||| || ||||| || |||||||||||| | ||||| || Sbjct 36455 GTAATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGC 36412 Score = 675 bits (748), Expect = 0.0 Identities = 718/944 (76%), Gaps = 6/944 (1%) Strand=Plus/Plus Query 169732 GGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAAC---CTGCTTTATC 169788 |||||||||||||| || |||||||| || ||||| |||| || | | | ||||| Sbjct 108296 GGTTGGTTCGGTGTGTTAATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATC 108355 Query 169789 GTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGT 169848 | || |||||||||||||| || || || |||||||| ||| | || || || | ||| Sbjct 108356 G--GC-TTCATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGT 108412 Query 169849 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 169908 || || | || ||||||||||||||||||||||| || | || | || ||||||||| Sbjct 108413 TCTTTATTATACGGTAACAACATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATC 108472 Query 169909 GGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGT 169968 ||||| |||||||| || ||||||||||| || || |||| |||||||| || |||||| Sbjct 108473 GGTCTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGT 108532 Query 169969 GGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGA 170028 |||||||| |||||| | | | ||||||| | | || | | | ||||||||| | Sbjct 108533 GGTCCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGT 108592 Query 170029 CAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCT 170088 |||||||||| || |||||||||||||||||||||||||||||||| || || || ||| Sbjct 108593 GAGTGGGAACTTTCTTACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCT 108652 Query 170089 CCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCA 170148 ||||| | || ||| || ||||||||| | || || |||| || || |||||||| Sbjct 108653 CCAGTAGCTGCTGCAACTGCAGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCT 108712 Query 170149 GACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAG 170208 || || |||||| |||||||||| ||||| || ||||||||| ||||||||||||| ||| Sbjct 108713 GATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAG 108772 Query 170209 CACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCA 170268 ||||||||| | |||||||||||||| ||| ||| ||||||||| | || || || || Sbjct 108773 CACAACATTTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCA 108832 Query 170269 CTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGAT 170328 | |||||||| |||||||||||| | ||||| || || ||||| | || || || || Sbjct 108833 TTATTCTCAGCTATGCACGGTTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAA 108892 Query 170329 AACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTT 170388 ||||| || ||| | || |||||||| || ||||||||||| || |||||||| || Sbjct 108893 AACGAATCTGCTAACGAAGGTTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTA 108952 Query 170389 GCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGT 170448 || ||||| || ||||||||| | | ||||||||||| || || ||||| |||| Sbjct 108953 GCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGT 109012 Query 170449 AGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGT 170508 | ||||||||| | ||| | | || ||| | ||||| ||||| ||| | | ||| Sbjct 109013 TCATTACACTTCTTCTTAGCTGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGT 109072 Query 170509 ATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGA 170568 | | || |||||||| ||| | || || || ||||||||||| ||| | || ||| | Sbjct 109073 TTATCAACTATGGCATTCAACTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCA 109132 Query 170569 TCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAA 170628 ||| ||| | || ||||| ||| | | ||| | || ||| ||||||||||| Sbjct 109133 CAAGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAA 109192 Query 170629 GTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGC 170672 |||||||| || ||||| || |||||||||||| | ||||| || Sbjct 109193 GTAATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGC 109236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582799040768000