Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq6720 639 2e-178 >seq6720 Length=135362 Score = 639 bits (708), Expect = 2e-178 Identities = 735/982 (75%), Gaps = 10/982 (1%) Strand=Plus/Plus Query 83979 TCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGA 84038 || || |||||||| || ||||||||||||||||| ||||||||||| | ||||| Sbjct 36418 TCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTAAGTTAGCACGG 36477 Query 84039 TTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTG 84098 || | | || ||||| || || | ||||| ||| ||| |||| || ||| Sbjct 36478 TTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAACTGATTGGTTG 36537 Query 84099 AAGTTAAATCCATTCAGATTAAATGCCAT-GGTGCTAACACCCAGAGCAGCAAACCAAAT 84157 ||||| || || || | || |||||||| | || ||| ||| | ||||| |||||||| Sbjct 36538 AAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGAACCAAAT 36596 Query 84158 GCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGC 84217 || | || ||||||||||| ||||| ||||| | |||||| |||||||| || || Sbjct 36597 GCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGATGC 36656 Query 84218 ATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTC 84277 || |||||||| | |||||| ||||| ||||| ||||| || || || ||||| || || Sbjct 36657 GTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTCTCTTC 36716 Query 84278 TTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAG 84337 ||||||||| || |||||||| | ||| || | ||||| |||||||| ||||||| Sbjct 36717 TTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAA 36776 Query 84338 AGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGC 84397 || ||||| || | |||||| ||||| || ||||||| | ||||| ||||||||||| Sbjct 36777 TGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACACCAGC 36836 Query 84398 AACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCAT 84457 ||| || |||||||| || || ||||| | ||||| || || || ||||| || | ||| Sbjct 36837 AACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGAATACGATCAT 36896 Query 84458 GTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAA 84517 | ||||||| || || |||||||| | ||||| |||||||||||||||||||| |||| Sbjct 36897 GAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCCGAT 36956 Query 84518 AGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGAT 84577 || || | | |||||| |||| ||| || || |||||||| ||||||||||||||||| Sbjct 36957 TGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAGCAACACAGAT 37016 Query 84578 CCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAA---GCAAA 84634 ||| ||||||||||| | ||| || ||||||||||| ||||||||||||||| |||| Sbjct 37017 CCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGTAAGATGCAA- 37075 Query 84635 TGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTC 84694 |||| | | |||||| | || | | ||| ||||| ||||| || |||| ||| || Sbjct 37076 --CACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTC 37133 Query 84695 GTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGG 84754 ||| | | || ||||||||||| || ||||| || ||||| || || ||||| | || Sbjct 37134 GTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGTAGG 37193 Query 84755 AACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACG 84814 | | |||||||| ||||||||||| ||||| | | |||||||| ||||||||||| Sbjct 37194 GATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTGGCTCACG 37253 Query 84815 GATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGG 84873 |||||| || ||||| ||||| || || | | ||| | || ||||| ||||| || | Sbjct 37254 GATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAGA-TGTAG 37312 Query 84874 CAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAG 84933 | | | || || ||||| | || |||||||| | || | |||||| | || Sbjct 37313 CTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGGTTTTCAG 37372 Query 84934 TGGAGGTGACCCAATCACAGAA 84955 | || |||| ||| ||||| || Sbjct 37373 TTGAAGTGATCCACTCACAAAA 37394 Score = 639 bits (708), Expect = 2e-178 Identities = 735/982 (75%), Gaps = 10/982 (1%) Strand=Plus/Minus Query 83979 TCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGA 84038 || || |||||||| || ||||||||||||||||| ||||||||||| | ||||| Sbjct 109230 TCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTAAGTTAGCACGG 109171 Query 84039 TTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTG 84098 || | | || ||||| || || | ||||| ||| ||| |||| || ||| Sbjct 109170 TTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAACTGATTGGTTG 109111 Query 84099 AAGTTAAATCCATTCAGATTAAATGCCATGGT-GCTAACACCCAGAGCAGCAAACCAAAT 84157 ||||| || || || | || |||||||| || | ||| ||| | ||||| |||||||| Sbjct 109110 AAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGAACCAAAT 109052 Query 84158 GCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGC 84217 || | || ||||||||||| ||||| ||||| | |||||| |||||||| || || Sbjct 109051 GCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGATGC 108992 Query 84218 ATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTC 84277 || |||||||| | |||||| ||||| ||||| ||||| || || || ||||| || || Sbjct 108991 GTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTCTCTTC 108932 Query 84278 TTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAG 84337 ||||||||| || |||||||| | ||| || | ||||| |||||||| ||||||| Sbjct 108931 TTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGGATTAA 108872 Query 84338 AGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGC 84397 || ||||| || | |||||| ||||| || ||||||| | ||||| ||||||||||| Sbjct 108871 TGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACACCAGC 108812 Query 84398 AACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCAT 84457 ||| || |||||||| || || ||||| | ||||| || || || ||||| || | ||| Sbjct 108811 AACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGAATACGATCAT 108752 Query 84458 GTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAA 84517 | ||||||| || || |||||||| | ||||| |||||||||||||||||||| |||| Sbjct 108751 GAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGTCCGAT 108692 Query 84518 AGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGAT 84577 || || | | |||||| |||| ||| || || |||||||| ||||||||||||||||| Sbjct 108691 TGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAGCAACACAGAT 108632 Query 84578 CCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGC 84637 ||| ||||||||||| | ||| || ||||||||||| |||||||||||||||| |||| Sbjct 108631 CCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGTAAG---ATGC 108575 Query 84638 ACCA---ATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTC 84694 | || | | |||||| | || | | ||| ||||| ||||| || |||| ||| || Sbjct 108574 AACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTC 108515 Query 84695 GTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGG 84754 ||| | | || ||||||||||| || ||||| || ||||| || || ||||| | || Sbjct 108514 GTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGTAGG 108455 Query 84755 AACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACG 84814 | | |||||||| ||||||||||| ||||| | | |||||||| ||||||||||| Sbjct 108454 GATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTGGCTCACG 108395 Query 84815 GATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGG 84873 |||||| || ||||| ||||| || || | | ||| | || ||||| ||||| || | Sbjct 108394 GATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAGA-TGTAG 108336 Query 84874 CAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAG 84933 | | | || || ||||| | || |||||||| | || | |||||| | || Sbjct 108335 CTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGGTTTTCAG 108276 Query 84934 TGGAGGTGACCCAATCACAGAA 84955 | || |||| ||| ||||| || Sbjct 108275 TTGAAGTGATCCACTCACAAAA 108254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571225613017600