Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq6720 603 3e-168 >seq6720 Length=135362 Score = 603 bits (668), Expect = 3e-168 Identities = 727/986 (74%), Gaps = 2/986 (0%) Strand=Plus/Plus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| ||| | |||||||||||| |||||||| || ||||| |||||||| ||||||| Sbjct 36412 GCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTAAGTTA 36471 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | |||||||||||||| | || | || | |||||||| ||||| Sbjct 36472 GCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAACTGAT 36531 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || |||||||| || ||||| | || || |||||||| || | || | ||| || | | Sbjct 36532 TGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAAC 36591 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || ||||| | || ||||||||||| | |||||| ||||| || || || || Sbjct 36592 CAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAT 36651 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 || || |||||||| | | |||||||| || || || || || ||||| || ||| Sbjct 36652 GATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTC 36711 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 36332 ||||||||||| || ||||| || || | ||| |||||| |||| |||||||| Sbjct 36712 TCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGG 36771 Query 36333 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 36392 || | ||| ||||| || | ||||||||||| | |||||| | ||||| ||||| Sbjct 36772 ATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACA 36831 Query 36393 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 36452 || |||||||| | ||| ||||| || ||||| | || ||||| || || || || || Sbjct 36832 CCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGAATACG 36891 Query 36453 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 36512 | ||| || |||||||| || || ||||| | ||||||||||||||||||| |||||| Sbjct 36892 ATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGT 36951 Query 36513 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 || | ||||||| ||||||||| ||| ||| || || || || ||||| ||||| ||| Sbjct 36952 CCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAGCAACA 37011 Query 36573 CATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 36632 || ||||| || | |||||||| | ||| ||||||||| | || |||| ||||| | Sbjct 37012 CAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGTAAGAT 37071 Query 36633 GAGATACC-AATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCA 36691 | | ||| ||| || |||||| | || || | ||| || || || ||||| |||||||| Sbjct 37072 GCAACACCTAATAAG-AAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCA 37130 Query 36692 CTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGA 36751 |||||| | | ||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 37131 CTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGT 37190 Query 36752 TGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTC 36811 |||| || || ||||||||||||||||| || || | ||| | || || || ||||| Sbjct 37191 AGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTGGCTC 37250 Query 36812 ACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCAC 36871 ||| |||||||| ||||| || ||||| || || | || | || | ||| | | Sbjct 37251 ACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAGATGT 37310 Query 36872 TGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTT 36931 |||||||| | ||||||||||| || || ||||| || | || | ||||| | Sbjct 37311 AGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGGTTTTC 37370 Query 36932 TGTACTTGTAACCCAGTCACATAAAC 36957 || || | ||| ||||| |||| Sbjct 37371 AGTTGAAGTGATCCACTCACAAAAAC 37396 Score = 603 bits (668), Expect = 3e-168 Identities = 727/986 (74%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| ||| | |||||||||||| |||||||| || ||||| |||||||| ||||||| Sbjct 109236 GCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTAAGTTA 109177 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | |||||||||||||| | || | || | |||||||| ||||| Sbjct 109176 GCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAACTGAT 109117 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || |||||||| || ||||| | || || |||||||| || | || | ||| || | | Sbjct 109116 TGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAAC 109057 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || ||||| | || ||||||||||| | |||||| ||||| || || || || Sbjct 109056 CAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAT 108997 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 || || |||||||| | | |||||||| || || || || || ||||| || ||| Sbjct 108996 GATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTC 108937 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 36332 ||||||||||| || ||||| || || | ||| |||||| |||| |||||||| Sbjct 108936 TCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGG 108877 Query 36333 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 36392 || | ||| ||||| || | ||||||||||| | |||||| | ||||| ||||| Sbjct 108876 ATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACA 108817 Query 36393 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 36452 || |||||||| | ||| ||||| || ||||| | || ||||| || || || || || Sbjct 108816 CCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGAATACG 108757 Query 36453 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 36512 | ||| || |||||||| || || ||||| | ||||||||||||||||||| |||||| Sbjct 108756 ATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGT 108697 Query 36513 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 || | ||||||| ||||||||| ||| ||| || || || || ||||| ||||| ||| Sbjct 108696 CCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAGCAACA 108637 Query 36573 CATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 36632 || ||||| || | |||||||| | ||| ||||||||| | || |||| ||||| | Sbjct 108636 CAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGTAAGAT 108577 Query 36633 GAGATACC-AATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCA 36691 | | ||| ||| |||| |||| | || || | ||| || || || ||||| |||||||| Sbjct 108576 GCAACACCTAATAAGAA-GTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCA 108518 Query 36692 CTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGA 36751 |||||| | | ||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 108517 CTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGT 108458 Query 36752 TGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTC 36811 |||| || || ||||||||||||||||| || || | ||| | || || || ||||| Sbjct 108457 AGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTGGCTC 108398 Query 36812 ACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCAC 36871 ||| |||||||| ||||| || ||||| || || | || | || | ||| | | Sbjct 108397 ACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAGATGT 108338 Query 36872 TGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTT 36931 |||||||| | ||||||||||| || || ||||| || | || | ||||| | Sbjct 108337 AGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGGTTTTC 108278 Query 36932 TGTACTTGTAACCCAGTCACATAAAC 36957 || || | ||| ||||| |||| Sbjct 108277 AGTTGAAGTGATCCACTCACAAAAAC 108252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150442393738880