Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq6720 518 1e-142 >seq6720 Length=135362 Score = 518 bits (574), Expect = 1e-142 Identities = 709/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| || | ||||||||||||||| || ||||||||||||||||||||||| | ||| Sbjct 36412 GCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTAAGTTA 36471 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | || || ||||||||| | | | ||| || ||||| ||||| Sbjct 36472 GCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAACTGAT 36531 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || ||||| | || || |||||||| || | || | || || | | Sbjct 36532 TGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAAC 36591 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || ||||| | || ||||||| ||| | |||||| ||||| ||| ||||| || Sbjct 36592 CAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAT 36651 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 || || |||||||| | | |||||||| || || || || || ||||| || || Sbjct 36652 GATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTC 36711 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGA 5554 ||||| ||||| || ||||| || || | ||| ||| |||| |||||||| Sbjct 36712 TCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGG 36771 Query 5555 ATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACC 5614 || | || ||||| || | || |||||||| | ||| || | ||||| ||||| Sbjct 36772 ATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACA 36831 Query 5615 CCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACG 5674 ||||||||||| | ||||||||| || ||||| | || ||||| || || ||||||||| Sbjct 36832 CCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGAATACG 36891 Query 5675 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGT 5734 | ||| ||||| ||||||||||||||||| | ||||||||||||| |||| || ||| Sbjct 36892 ATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGT 36951 Query 5735 CCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTAC 5793 |||| ||||| | ||| ||||||| ||| || || || || || ||||| || || || Sbjct 36952 CCGATTGGGTAGATTAAGAATACTGCAGT-TGCAGCAGCTACTGGAGCTGAGTAAGCAAC 37010 Query 5794 GCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGC 5853 || ||||| || ||||| ||||| | |||| ||||||||| | || |||| ||||| Sbjct 37011 ACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGTAAGA 37070 Query 5854 TGCGATACC-AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCC 5912 ||| | ||| ||||| ||||||| | |||| | |||||| || || || ||||| | || Sbjct 37071 TGCAACACCTAATAA-GAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACC 37129 Query 5913 ATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGC 5972 | || || | | || |||||||| || || |||||||| | || |||||||| || Sbjct 37130 ACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGATG 37189 Query 5973 TGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTT 6032 | || | || || || || ||||||||||| || || | || ||| || | || || | Sbjct 37190 TAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTGGCT 37249 Query 6033 CACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAG 6092 |||| || || ||||| || ||||| || || || | ||| | | || ||| ||| | Sbjct 37250 CACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAGATG 37309 Query 6093 TTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGT 6152 | || ||||| | || |||||||| ||||| ||||| || | || | ||||| | Sbjct 37310 TAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGGTTTT 37369 Query 6153 TGGTGCTAGTAACCCAGTCACAGAA 6177 || ||| | ||| ||||| || Sbjct 37370 CAGTTGAAGTGATCCACTCACAAAA 37394 Score = 518 bits (574), Expect = 1e-142 Identities = 709/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| || | ||||||||||||||| || ||||||||||||||||||||||| | ||| Sbjct 109236 GCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTAAGTTA 109177 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | || || ||||||||| | | | ||| || ||||| ||||| Sbjct 109176 GCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAACTGAT 109117 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || ||||| | || || |||||||| || | || | || || | | Sbjct 109116 TGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTGAAC 109057 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || ||||| | || ||||||| ||| | |||||| ||||| ||| ||||| || Sbjct 109056 CAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAT 108997 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 || || |||||||| | | |||||||| || || || || || ||||| || || Sbjct 108996 GATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTC 108937 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGA 5554 ||||| ||||| || ||||| || || | ||| ||| |||| |||||||| Sbjct 108936 TCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCACGG 108877 Query 5555 ATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACC 5614 || | || ||||| || | || |||||||| | ||| || | ||||| ||||| Sbjct 108876 ATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAATACA 108817 Query 5615 CCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACG 5674 ||||||||||| | ||||||||| || ||||| | || ||||| || || ||||||||| Sbjct 108816 CCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGAATACG 108757 Query 5675 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGT 5734 | ||| ||||| ||||||||||||||||| | ||||||||||||| |||| || ||| Sbjct 108756 ATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGT 108697 Query 5735 CCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTAC 5793 |||| ||||| | ||| ||||||| ||| | | || || || || ||||| || || || Sbjct 108696 CCGATTGGGTAGATTAAGAATACTGCAGTTG-CAGCAGCTACTGGAGCTGAGTAAGCAAC 108638 Query 5794 GCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGC 5853 || ||||| || ||||| ||||| | |||| ||||||||| | || |||| ||||| Sbjct 108637 ACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGTAAGA 108578 Query 5854 TGCGATACC-AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCC 5912 ||| | ||| |||||| |||||| | |||| | |||||| || || || ||||| | || Sbjct 108577 TGCAACACCTAATAAG-AAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACC 108519 Query 5913 ATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGC 5972 | || || | | || |||||||| || || |||||||| | || |||||||| || Sbjct 108518 ACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGATG 108459 Query 5973 TGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTT 6032 | || | || || || || ||||||||||| || || | || ||| || | || || | Sbjct 108458 TAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTGGCT 108399 Query 6033 CACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAG 6092 |||| || || ||||| || ||||| || || || | ||| | | || ||| ||| | Sbjct 108398 CACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAGATG 108339 Query 6093 TTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGT 6152 | || ||||| | || |||||||| ||||| ||||| || | || | ||||| | Sbjct 108338 TAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGGTTTT 108279 Query 6153 TGGTGCTAGTAACCCAGTCACAGAA 6177 || ||| | ||| ||||| || Sbjct 108278 CAGTTGAAGTGATCCACTCACAAAA 108254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152637418561920