Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq6720 600 4e-167 >seq6720 Length=135362 Score = 600 bits (664), Expect = 4e-167 Identities = 727/990 (73%), Gaps = 0/990 (0%) Strand=Plus/Plus Query 25448 CAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 |||| |||||||| | ||||||||||| |||||||| || ||||| |||||||| |||| Sbjct 36407 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 36466 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 25567 ||| |||||||| | |||||||||||||| | || | || | |||||||| | Sbjct 36467 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 36526 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 25627 |||| || |||||||| || ||||| | || || |||||||| || | || | ||| | Sbjct 36527 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 36586 Query 25628 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTAT 25687 | | ||| ||||| | || ||||||||||| | |||||| ||||| ||| || | Sbjct 36587 TGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 36646 Query 25688 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 25747 | || || || |||||||| | | |||||||| || || || || || ||||| | Sbjct 36647 TGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 36706 Query 25748 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 25807 | |||||||||||||| || ||||| || || | ||| |||||| |||| |||| Sbjct 36707 AAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTT 36766 Query 25808 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 25867 |||| || | ||| ||||| || | ||||||||||| | |||||| | ||||| | Sbjct 36767 CACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAA 36826 Query 25868 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 25927 |||| || |||||||| | ||| ||||| || ||||| | || ||||| || || || | Sbjct 36827 ATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGA 36886 Query 25928 AGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCC 25987 | || | ||| || |||||||| || || ||||| | ||||||||||||||||||| | Sbjct 36887 ATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 36946 Query 25988 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 26047 ||||||| | ||||||| ||||||||| ||| ||| || || || || ||||| |||| Sbjct 36947 CTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAG 37006 Query 26048 CTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGT 26107 | ||||| ||||| || | ||| |||| | ||| ||||||||| | || |||| || Sbjct 37007 CAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGT 37066 Query 26108 AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACA 26167 ||| || | || | | |||||| | || || | ||| || || |||||||| || | Sbjct 37067 AAGATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATA 37126 Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227 |||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 37127 ACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAG 37186 Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287 ||| |||| || || || |||||||||||||| || || | ||| | || || || | Sbjct 37187 ATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTG 37246 Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 26347 ||||||| |||||||| ||||| || ||||| || || | || | || | ||| | | Sbjct 37247 GCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAG 37306 Query 26348 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGT 26407 |||||||| | ||||||||||| || || ||||| || | || | |||| Sbjct 37307 ATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGGT 37366 Query 26408 TGTTTGTACTTGTAACCCAGTCACATAAAC 26437 | | || || | ||| ||||| |||| Sbjct 37367 TTTCAGTTGAAGTGATCCACTCACAAAAAC 37396 Score = 600 bits (664), Expect = 4e-167 Identities = 727/990 (73%), Gaps = 0/990 (0%) Strand=Plus/Minus Query 25448 CAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 |||| |||||||| | ||||||||||| |||||||| || ||||| |||||||| |||| Sbjct 109241 CAGAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTA 109182 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 25567 ||| |||||||| | |||||||||||||| | || | || | |||||||| | Sbjct 109181 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAA 109122 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 25627 |||| || |||||||| || ||||| | || || |||||||| || | || | ||| | Sbjct 109121 CTGATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAG 109062 Query 25628 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTAT 25687 | | ||| ||||| | || ||||||||||| | |||||| ||||| ||| || | Sbjct 109061 TGAACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGT 109002 Query 25688 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 25747 | || || || |||||||| | | |||||||| || || || || || ||||| | Sbjct 109001 TGAATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 108942 Query 25748 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 25807 | |||||||||||||| || ||||| || || | ||| |||||| |||| |||| Sbjct 108941 AAGTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTT 108882 Query 25808 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 25867 |||| || | ||| ||||| || | ||||||||||| | |||||| | ||||| | Sbjct 108881 CACGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAA 108822 Query 25868 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 25927 |||| || |||||||| | ||| ||||| || ||||| | || ||||| || || || | Sbjct 108821 ATACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGA 108762 Query 25928 AGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCC 25987 | || | ||| || |||||||| || || ||||| | ||||||||||||||||||| | Sbjct 108761 ATACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 108702 Query 25988 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 26047 ||||||| | ||||||| ||||||||| ||| ||| || || || || ||||| |||| Sbjct 108701 CTTGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAG 108642 Query 26048 CTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGT 26107 | ||||| ||||| || | ||| |||| | ||| ||||||||| | || |||| || Sbjct 108641 CAACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGT 108582 Query 26108 AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACA 26167 ||| || | || | | |||||| | || || | ||| || || |||||||| || | Sbjct 108581 AAGATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATA 108522 Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227 |||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 108521 ACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAG 108462 Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287 ||| |||| || || || |||||||||||||| || || | ||| | || || || | Sbjct 108461 ATGTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTG 108402 Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 26347 ||||||| |||||||| ||||| || ||||| || || | || | || | ||| | | Sbjct 108401 GCTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAG 108342 Query 26348 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGT 26407 |||||||| | ||||||||||| || || ||||| || | || | |||| Sbjct 108341 ATGTAGCTGTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGGT 108282 Query 26408 TGTTTGTACTTGTAACCCAGTCACATAAAC 26437 | | || || | ||| ||||| |||| Sbjct 108281 TTTCAGTTGAAGTGATCCACTCACAAAAAC 108252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151981470910720