Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq6720 780 0.0 >seq6720 Length=135362 Score = 780 bits (864), Expect = 0.0 Identities = 766/986 (78%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||| | ||| |||| ||| ||| || || | || |||||||||||||||| || ||| Sbjct 37391 TGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATG 37332 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 ||||||||||| | |||| || || ||||| || | ||||| ||||| |||||| Sbjct 37331 ATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCA 37272 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||||||||||||| | || || ||| | ||||| | | || |||||||||||| Sbjct 37271 GTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATC 37212 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 |||||||||||| | | |||| || || || || |||||||||||||| || || ||| Sbjct 37211 ATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGG 37152 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| || || | || |||||||| || || ||||| |||| |||| | | || | | Sbjct 37151 GAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGC 37092 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | || | ||| |||||| ||||||||||||||||||| ||| Sbjct 37091 CACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTA 37032 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 |||||||||||||||||||||||||| ||||| || |||||| |||| ||| || || Sbjct 37031 GGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTA 36972 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 ||||| |||| || |||| ||||||||||||||||| | |||||| | ||||| ||| Sbjct 36971 TTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCT 36912 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| |||| |||| |||| |||||||| ||||||||||| |||||||||| ||| Sbjct 36911 GGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTC 36852 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || |||||||| ||||||||| | || |||||||||||||| Sbjct 36851 CACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCA 36792 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || ||||| || | ||| | ||||||||||| | || || ||| | ||||| Sbjct 36791 TTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTAC 36732 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 || || || ||||||||||||||||||||||| || ||||| || || ||||||||||| Sbjct 36731 AAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGT 36672 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 || |||||||| || ||||| ||||||||||| |||||| | ||||||||| | ||||| Sbjct 36671 TTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCT 36612 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | || || ||||||| ||||||||||| | ||| | |||||||||||||||||| | Sbjct 36611 TGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAACTTA 36552 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGG 163401 ||||| ||||||||||||||||| || ||||| || ||| || | |||||| Sbjct 36551 AACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGG 36492 Query 163402 GCAGATATCCTTAACAGAGCAGGACTT-GGTATGGAAGTTATGCACGAGCGTAATGCTCA 163460 || || ||| | ||| | || |||| ||||||||||| |||||||| ||||| ||||| Sbjct 36491 GCTGACATCATCAACCGTGC-TAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCA 36433 Query 163461 CAACTTCCCACTTGACCTTGCTGCTG 163486 |||||||||| | ||| | ||| ||| Sbjct 36432 CAACTTCCCATTAGACTTAGCTTCTG 36407 Score = 780 bits (864), Expect = 0.0 Identities = 766/986 (78%), Gaps = 2/986 (0%) Strand=Plus/Plus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||| | ||| |||| ||| ||| || || | || |||||||||||||||| || ||| Sbjct 108257 TGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTTAATG 108316 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 ||||||||||| | |||| || || ||||| || | ||||| ||||| |||||| Sbjct 108317 ATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCCTCCA 108376 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||||||||||||| | || || ||| | ||||| | | || |||||||||||| Sbjct 108377 GTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAACATC 108436 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 |||||||||||| | | |||| || || || || |||||||||||||| || || ||| Sbjct 108437 ATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAATTTGG 108496 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| || || | || |||||||| || || ||||| |||| |||| | | || | | Sbjct 108497 GAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGC 108556 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | || | ||| |||||| ||||||||||||||||||| ||| Sbjct 108557 CACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTTTA 108616 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 |||||||||||||||||||||||||| ||||| || |||||| |||| ||| || || Sbjct 108617 GGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGCAGTA 108676 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 ||||| |||| || |||| ||||||||||||||||| | |||||| | ||||| ||| Sbjct 108677 TTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCT 108736 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| |||| |||| |||| |||||||| ||||||||||| |||||||||| ||| Sbjct 108737 GGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTC 108796 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || |||||||| ||||||||| | || |||||||||||||| Sbjct 108797 CACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGTTCA 108856 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || ||||| || | ||| | ||||||||||| | || || ||| | ||||| Sbjct 108857 TTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGTTAC 108916 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 || || || ||||||||||||||||||||||| || ||||| || || ||||||||||| Sbjct 108917 AAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGT 108976 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 || |||||||| || ||||| ||||||||||| |||||| | ||||||||| | ||||| Sbjct 108977 TTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCT 109036 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | || || ||||||| ||||||||||| | ||| | |||||||||||||||||| | Sbjct 109037 TGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAACTTA 109096 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGG 163401 ||||| ||||||||||||||||| || ||||| || ||| || | |||||| Sbjct 109097 AACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACACTTGG 109156 Query 163402 GCAGATATCCTTAACAGAGCAGGACTT-GGTATGGAAGTTATGCACGAGCGTAATGCTCA 163460 || || ||| | ||| | || |||| ||||||||||| |||||||| ||||| ||||| Sbjct 109157 GCTGACATCATCAACCGTGC-TAACTTAGGTATGGAAGTAATGCACGAACGTAACGCTCA 109215 Query 163461 CAACTTCCCACTTGACCTTGCTGCTG 163486 |||||||||| | ||| | ||| ||| Sbjct 109216 CAACTTCCCATTAGACTTAGCTTCTG 109241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553038340876800