Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2517 122 2e-22 seq6716 118 2e-21 seq3912 96.9 6e-15 seq1025 86.0 1e-11 >seq2517 Length=9782 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| |||| ||||||| |||||| ||| ||||| |||||||||||| |||||||| Sbjct 4644 TAGAGCAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAG 4585 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || | || ||||||||||| || || ||| ||| Sbjct 4584 AAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCG 4525 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCG 48268 ||||||||||||||| || || ||| Sbjct 4524 CTGAAGAAGATGCCCTCGACCGCGGCG 4498 >seq6716 Length=19574 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| |||| ||||||| |||||| ||| ||||| |||||||||||| |||||||| Sbjct 5345 TAGAGCAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGAG 5404 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || | || ||||||||||| || || ||| ||| Sbjct 5405 AAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCG 5464 Query 48242 GAGAAGAAGATGCCCTCCACTGCCG 48266 |||| |||||||||||| |||| Sbjct 5465 CTAAAGAGGATGCCCTCCACAGCCG 5489 Score = 118 bits (130), Expect = 2e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| |||| ||||||| |||||| ||| ||||| |||||||||||| ||||||| Sbjct 10523 TAGAGCAGGCAGCCAAAGTCGGTGTGCAGGCCCTCGTCACGGCTGATGAGCTCGTTGGAA 10582 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || | || |||||||| || || || ||| ||| Sbjct 10583 AAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAGCTGCCG 10642 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAA 48291 ||||||||||||||| ||||| ||| | || |||| ||| |||| Sbjct 10643 CTGAAGAAGATGCCCTCGACTGCGGCGTAGGCCACCAGCCGCTCGGCGAA 10692 >seq3912 Length=5383 Score = 96.9 bits (106), Expect = 6e-15 Identities = 119/162 (73%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| ||||| || ||| || ||| |||||||| | | | | ||| ||| Sbjct 944 CATGAAGAGGTCGTTGATCCAGAGGGCGTAAAACAGGTCACGCGCGCGCGCCTCCTCCTT 1003 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || ||| |||||||| || | |||||||| | |||||||||||| ||||||| ||| Sbjct 1004 CCCGTGGTTCTTGCGCAGCTCGATGAAGTCAAACACGTCCGCGTGCCAGGGCTCCAGGTA 1063 Query 213941 GATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCAC 213979 ||| ||||| |||||| | ||| ||||||||||||||| Sbjct 1064 GATCGCAAACGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 1105 Score = 93.3 bits (102), Expect = 8e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 213469 GCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTG 213528 |||||||| ||||| ||||| ||||||||||| || || ||| | | | | | Sbjct 99 GCACAAACCGCGGCAGCGCGATCGACGCCAGGTTGCACACCGCGGTCTCGTCGGGGGCGG 158 Query 213529 TGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGT 213588 ||||||||| |||||||||||||||||| ||| |||||||||||||||||| || | Sbjct 159 TGTACTCCACAATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGAT 218 Query 213589 T 213589 | Sbjct 219 T 219 >seq1025 Length=17526 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || || | |||||||||||| |||||| || |||||||||||||||||| ||||| | Sbjct 16407 TACAGGAGGCAGGCAAAGTCTGTGTGCAGCCCCTCGTCCCGGCTGATGAGCTCGTTGCTG 16466 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || ||| || ||||||| || | || |||| ||| || || || ||| ||| Sbjct 16467 AACGTGAGCCCTGGCATGAGGCCACGCTTCTTGATCCAAAATATGGCGCAGAAGCTGCCG 16526 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| ||||||||| || ||| ||||| Sbjct 16527 CTGAAGTGGATGCCCTCGACGCACGCAAACGC 16558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931454551244800