Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6716 143 5e-29 seq2517 131 3e-25 seq1025 107 4e-18 seq3912 86.0 1e-11 >seq6716 Length=19574 Score = 143 bits (158), Expect = 5e-29 Identities = 134/168 (80%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGG 25933 |||||||||||| |||| || || || ||||||||||| |||||||| || |||| Sbjct 10687 CGAGCGGCTGGTGGCCTACGCCGCAGTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGCG- 10629 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||| ||||||||| || || |||||| || || ||||||||||||||||| Sbjct 10628 CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGAGCTCA 10569 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||| | |||||||| || |||| || |||| |||||||||||||| Sbjct 10568 TCAGCCGTGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCTCTACA 10521 Score = 134 bits (148), Expect = 3e-26 Identities = 132/168 (79%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGG 25933 ||||||||| || |||| | ||||||||||||||| | || ||||| || |||| Sbjct 5509 CGAGCGGCTTGTGGCCTACACGGCTGTGGAGGGCATCCTCTTTAGCGGCAGCTTCTGCG- 5451 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||||||| || || |||||| || || ||| ||||||||||||| Sbjct 5450 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCA 5391 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||| | |||||||| || |||| || |||| |||||||||||||| Sbjct 5390 TCAGCCGTGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCTCTACA 5343 >seq2517 Length=9782 Score = 131 bits (144), Expect = 3e-25 Identities = 130/166 (78%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGC 25934 ||||| || || |||| || || || ||||||||||| |||||||| | | ||| || Sbjct 4481 GAGCGCCTTGTGGCCTACGCCGCGGTCGAGGGCATCTTCTTCAGCGGCAGCTTCTGC-GC 4539 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||||||||| || || |||||| || || ||| |||||||||||||| Sbjct 4540 CATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCAT 4599 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||| | |||||||| || |||| || |||| ||||||||||||| Sbjct 4600 CAGCCGCGACGAGGGCCTGCACACCGACTTTGGCTGCCTGCTCTAC 4645 >seq1025 Length=17526 Score = 107 bits (118), Expect = 4e-18 Identities = 127/167 (76%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGC 25934 |||||||| | || ||||| ||| || ||||||||| |||||||| || |||| | Sbjct 16569 AGCGGCTGCTGGCGTTTGCGTGC-GTCGAGGGCATCCACTTCAGCGGCAGCTTCTGCG-C 16512 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 ||| || ||| ||||| || || |||||| ||||| || |||||||||||| Sbjct 16511 CATATTTTGGATCAAGAAGCGTGGCCTCATGCCAGGGCTCACGTTCAGCAACGAGCTCAT 16452 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||| |||||||||| || |||| ||| ||||||||||| || |||| Sbjct 16451 CAGCCGGGACGAGGGGCTGCACACAGACTTTGCCTGCCTCCTGTACA 16405 >seq3912 Length=5383 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 |||||||||||| |||||| || || | ||| || || | | ||| ||||||| Sbjct 944 CATGAAGAGGTCGTTGATCCAGAGGGCGTAAAACAGGTCACGCGCGCGCGCCTCCTCCTT 1003 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 |||| ||| || | ||| || | || ||||| | ||| |||||||| |||||||| || Sbjct 1004 CCCGTGGTTCTTGCGCAGCTCGATGAAGTCAAACACGTCCGCGTGCCAGGGCTCCAGGTA 1063 Query 222160 GACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || || | ||||| |||||| ||| ||||| ||||| Sbjct 1064 GATCGCAAACGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928766777036800