Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq6720 702 0.0 >seq6720 Length=135362 Score = 702 bits (778), Expect = 0.0 Identities = 739/972 (76%), Gaps = 0/972 (0%) Strand=Plus/Minus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 |||||| || ||| ||||||| || | || || || || |||| ||||| || || | Sbjct 37395 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 37336 Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 |||||||| | | | | |||||| | ||||||| || ||| | || ||||| Sbjct 37335 AATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCC 37276 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 ||| || || ||||| || ||||| || |||||| |||| ||| | | ||||||||||| Sbjct 37275 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 37216 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 ||||||||||||||| || | || | ||||||||||| || || ||||||||||| || Sbjct 37215 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 37156 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 |||||||| |||||| | || |||||| | |||||||||||||||||||| | | || Sbjct 37155 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 37096 Query 8547 TTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 || ||||||| | | || || |||| ||||||||||| ||||||||||||||||| Sbjct 37095 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 37036 Query 8607 CCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGC 8666 | || ||||||||||||||||||||||| ||||| ||||| || || ||||| |||| Sbjct 37035 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 36976 Query 8667 TGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTAT 8726 |||||| | |||| || | || |||||||| |||||||||||||||||| | ||||| Sbjct 36975 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 36916 Query 8727 CTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCC 8786 ||| ||||| ||||||| ||| | || ||||| |||||||||||||| | |||||||| Sbjct 36915 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 36856 Query 8787 CTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGG 8846 ||||||||| | |||||||||||||| || || || || | || || || ||||| || Sbjct 36855 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 36796 Query 8847 TTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGG 8906 |||| | || ||||| || | | ||||| || || |||| ||| ||| ||| | || Sbjct 36795 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 36736 Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966 ||||| || ||||||||||| || ||||||||||| || || || || || |||||||| Sbjct 36735 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 36676 Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026 ||| || ||||||||||| ||||| || ||||| ||| | || || |||||| | || Sbjct 36675 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 36616 Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086 ||| ||||| || | | || ||||| || || | || | || || ||||| ||||| Sbjct 36615 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 36556 Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146 | | || || |||||||||||||| || || | || |||||| || || | ||||| Sbjct 36555 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 36496 Query 9147 CTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGC 9206 ||||| ||| | | ||||| || | ||||||||||| ||||||||| | ||||| Sbjct 36495 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 36436 Query 9207 ACACAACTTCCC 9218 ||||||||||| Sbjct 36435 TCACAACTTCCC 36424 Score = 702 bits (778), Expect = 0.0 Identities = 739/972 (76%), Gaps = 0/972 (0%) Strand=Plus/Plus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 |||||| || ||| ||||||| || | || || || || |||| ||||| || || | Sbjct 108253 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTGTT 108312 Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 |||||||| | | | | |||||| | ||||||| || ||| | || ||||| Sbjct 108313 AATGATCCCTTGCTTATTAACAGCTACATCTGTATTCATTATCGGCTTCATCGCAGCTCC 108372 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 ||| || || ||||| || ||||| || |||||| |||| ||| | | ||||||||||| Sbjct 108373 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCTTTATTATACGGTAACAA 108432 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 ||||||||||||||| || | || | ||||||||||| || || ||||||||||| || Sbjct 108433 CATCATCTCTGGTGCTATTATCCCTACATCTAACGCAATCGGTCTTCACTTCTACCCAAT 108492 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 |||||||| |||||| | || |||||| | |||||||||||||||||||| | | || Sbjct 108493 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 108552 Query 8547 TTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 || ||||||| | | || || |||| ||||||||||| ||||||||||||||||| Sbjct 108553 TTGCCACTTCTTATTAGGTGTTGCATCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 108612 Query 8607 CCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGC 8666 | || ||||||||||||||||||||||| ||||| ||||| || || ||||| |||| Sbjct 108613 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTACTCAGCTCCAGTAGCTGCTGCAACTGC 108672 Query 8667 TGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTAT 8726 |||||| | |||| || | || |||||||| |||||||||||||||||| | ||||| Sbjct 108673 AGTATTCTTAATCTACCCAATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 108732 Query 8727 CTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCC 8786 ||| ||||| ||||||| ||| | || ||||| |||||||||||||| | |||||||| Sbjct 108733 CTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTTTAATGCACCC 108792 Query 8787 CTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGG 8846 ||||||||| | |||||||||||||| || || || || | || || || ||||| || Sbjct 108793 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 108852 Query 8847 TTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGG 8906 |||| | || ||||| || | | ||||| || || |||| ||| ||| ||| | || Sbjct 108853 TTCATTAGTAACTTCATCATTAATCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGG 108912 Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966 ||||| || ||||||||||| || ||||||||||| || || || || || |||||||| Sbjct 108913 TTACAAATTTGGTCAAGAAGAAGAGACTTACAACATCGTAGCTGCACACGGTTACTTTGG 108972 Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026 ||| || ||||||||||| ||||| || ||||| ||| | || || |||||| | || Sbjct 108973 TCGTTTAATCTTCCAATACGCATCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 109032 Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086 ||| ||||| || | | || ||||| || || | || | || || ||||| ||||| Sbjct 109033 TGCTTGGCCGGTAATCTGCATTTGGTTCACTGCTTTAGGTTTATCAACTATGGCATTCAA 109092 Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146 | | || || |||||||||||||| || || | || |||||| || || | ||||| Sbjct 109093 CTTAAACGGGTTCAACTTCAACCAATCAGTTGTTGATTCACAAGGTCGTGTATTAAACAC 109152 Query 9147 CTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGC 9206 ||||| ||| | | ||||| || | ||||||||||| ||||||||| | ||||| Sbjct 109153 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 109212 Query 9207 ACACAACTTCCC 9218 ||||||||||| Sbjct 109213 TCACAACTTCCC 109224 Score = 493 bits (546), Expect = 1e-134 Identities = 719/1016 (71%), Gaps = 0/1016 (0%) Strand=Plus/Plus Query 9812 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCT 9871 ||||||||| |||||||||| | | ||| || ||||||||||| |||||||| Sbjct 121699 TGGTTTGACGATTGTGATGACTGGTTACGTCAAGACCGTTTTGTTTTTGTAGGTTGGTCA 121758 Query 9872 GGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACG 9931 || || ||| | || || ||| ||| ||||| | ||||| ||| ||||||| || || Sbjct 121759 GGTCTTCTTTTATTACCTTGTGCGTATTTTGCATTAGGTGGTTGGTTTACTGGGACAACA 121818 Query 9932 TTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTC 9991 ||||| || ||||||||| || || | |||| | |||| | || ||| ||| ||| Sbjct 121819 TTTGTTACTTCTTGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTTC 121878 Query 9992 CTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 10051 | || || || || || || || || | ||||| ||||||| | | | ||||| Sbjct 121879 TTAACTGCTGCAGTTTCGACTCCAGCAAACAGTATGGCTCATTCTTTATTATTTATTTGG 121938 Query 10052 GGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTT 10111 || ||||| |||| || || || || ||| || | || || | ||| ||||| Sbjct 121939 GGACCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAATTAGGTGGTTTATGGACTTTT 121998 Query 10112 GTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCG 10171 || || || || || || || | |||||| || ||||||||||| || ||||| | || Sbjct 121999 GTAGCACTGCATGGTGCTTTTGGTTTAATTGGTTTTATGTTACGTCAATTTGAAATTGCA 122058 Query 10172 AGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTT 10231 | | | | | || || || || || || || || |||| || |||||||| ||| Sbjct 122059 CGTTCAGTAAACTTACGTCCATATAACGCAATTGCTTTCTCTGCACCAATTGCTGTATTT 122118 Query 10232 GTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTC 10291 || ||| || | || || || | || || ||| |||||||||| || || ||||| Sbjct 122119 GTTTCTGTATTTTTAATTTACCCTTTAGGTCAATCTGGTTGGTTCTTCGCCCCTAGTTTT 122178 Query 10292 GGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 10351 || || || || |||||||| || | | ||| |||| || || || || ||||| || Sbjct 122179 GGTGTTGCCGCTATTTTCCGTTTTATCTTATTCTTCCAAGGTTTCCACAACTGGACACTT 122238 Query 10352 AATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATC 10411 || || ||||| |||||||||||||||||| | | || | ||| || ||| || || Sbjct 122239 AACCCATTCCACATGATGGGAGTTGCTGGTGTTTTAGGTGCGGCTCTATTATGTGCTATT 122298 Query 10412 CACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAA 10471 || || | || |||||||| || |||| ||||||| || || ||||| ||| Sbjct 122299 CATGGTGCTACAGTAGAAAATACTCTTTTCGAAGATGGTGATGGTGCTAACACATTCCGT 122358 Query 10472 GCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGG 10531 || ||| | || |||| ||||| || || || ||||| || ||||| | |||||| Sbjct 122359 GCATTTAACCCTACGCAAGCTGAAGAAACTTACTCTATGGTAACAGCTAATAGATTCTGG 122418 Query 10532 TCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTT 10591 || || || ||||| | |||||| || ||||| ||| | || ||||||||| | ||| Sbjct 122419 TCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATTT 122478 Query 10592 GTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTT 10651 || ||||| | |||||||||| ||| ||||||| | | ||| | ||||| || | Sbjct 122479 GTTCCTGTGACAGGTCTTTGGATGTCTGCTATTGGTGTTGTAGGTTTAGCTCTTAACTTA 122538 Query 10652 CGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACG 10711 ||||||||||| || || || |||||||| | || | |||||||| |||||||| || Sbjct 122539 CGTGCTTACGACTTCGTTTCACAAGAGATTCGTGCTGCTGAAGATCCAGAATTTGAAACT 122598 Query 10712 TTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGAC 10771 ||||| || || || | ||||| || |||||| | ||||| |||||||| || ||| Sbjct 122599 TTCTACACTAAAAACCTTCTTCTTAATGAAGGTATCCGTGCTTGGATGGCTGCACAAGAC 122658 Query 10772 CAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACT 10827 || ||||||||| |||| || |||||||||||||| | ||| | ||||| || || Sbjct 122659 CAGCCACACGAACGCTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 122714 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 15402 CGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAAA 15461 ||||| |||||||||||||||||||| ||||||||||||| |||| | ||||||| || Sbjct 86177 CGGGATGTAGCGCAGTTTGGTAGCGCGTATGCTTTGGGAGCATGATGTCGCAGGTTCGAA 86236 Query 15462 TCCTGTATTCCCGA 15475 |||||| |||||| Sbjct 86237 TCCTGTCATCCCGA 86250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516436615680000