Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monoraphidium_20neglectum_20[refseq_20GCF_5F000611645.1_202015-02- 26] 6,720 sequences; 69,711,829 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq6720 567 2e-157 >seq6720 Length=135362 Score = 567 bits (628), Expect = 2e-157 Identities = 721/991 (73%), Gaps = 6/991 (1%) Strand=Plus/Plus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 |||||||| |||| |||||||| ||||| ||||| |||||||| ||||| | || | | Sbjct 36409 GAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTAAG 36468 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||||| | ||||| | ||||||||| || || || | ||| | | |||| Sbjct 36469 TTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAACT 36528 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||||||||| || || | || || |||||||| || | || | || || Sbjct 36529 GATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTG 36588 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| ||||| | || ||||||||||| |||||||| |||| | ||||| Sbjct 36589 AACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 36648 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || || || |||||||| | | |||||||| || || || || || || || || Sbjct 36649 AATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAA 36708 Query 18132 GTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCT 18191 |||||||||||||| |||||||| || || | ||| ||| || ||||| ||||| Sbjct 36709 GTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCA 36768 Query 18192 CTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 18251 | || | ||| ||||| || | ||||||||||| | |||||| | ||||| ||| Sbjct 36769 CGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAAT 36828 Query 18252 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAAT 18311 || || |||||||| | ||| ||||| || ||||| | || ||||| || ||||||||| Sbjct 36829 ACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGAAT 36888 Query 18312 ACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCT 18371 |||| |||||| ||||||||||| ||||| | ||||||||||||||||||| ||| Sbjct 36889 ACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCT 36948 Query 18372 TGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 ||||| | || || | | ||||||| ||||| |||||||| || || |||||| Sbjct 36949 TGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAGCA 37008 Query 18432 ACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 ||||| ||||| || |||||||||| | ||| ||||||||| | || ||||||||| Sbjct 37009 ACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGTAA 37068 Query 18492 GCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAAC 18551 | ||| | || | | |||||| | || || | ||| || || || ||||| |||||| Sbjct 37069 GATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAAC 37128 Query 18552 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 18611 |||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 37129 CACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 37188 Query 18612 GACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGC 18671 | |||| || || || || ||||||||||| || || | ||| | || || || ||| Sbjct 37189 GTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTGGC 37248 Query 18672 TCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGC---AATCAAAAATGCT 18728 ||||| |||||||| || || || |||||||| || | || | ||| || | | | Sbjct 37249 TCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAGAT 37308 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 |||||| ||||| | ||||||||| | || || ||||| || | ||| | ||| Sbjct 37309 GTAGCT---GTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGG 37365 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 || | || || | ||| ||||| |||| Sbjct 37366 TTTTCAGTTGAAGTGATCCACTCACAAAAAC 37396 Score = 567 bits (628), Expect = 2e-157 Identities = 721/991 (73%), Gaps = 6/991 (1%) Strand=Plus/Minus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 |||||||| |||| |||||||| ||||| ||||| |||||||| ||||| | || | | Sbjct 109239 GAAGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGTTCGTGCATTACTTCCATACCTAAG 109180 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||||| | ||||| | ||||||||| || || || | ||| | | |||| Sbjct 109179 TTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGTGAATCAACAACT 109120 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||||||||| || || | || || |||||||| || | || | || || Sbjct 109119 GATTGGTTGAAGTTGAACCCGTTTAAGTTGAATGCCATAGTTGATAAACCTAAAGCAGTG 109060 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| ||||| | || ||||||||||| |||||||| |||| | ||||| Sbjct 109059 AACCAAATGCAGATTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 109000 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || || || |||||||| | | |||||||| || || || || || || || || Sbjct 108999 AATGATGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAA 108940 Query 18132 GTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCT 18191 |||||||||||||| |||||||| || || | ||| ||| || ||||| ||||| Sbjct 108939 GTCTCTTCTTCTTGACCAAATTTGTAACCTTCGTTAGCAGATTCGTTTTCAGTAGTTTCA 108880 Query 18192 CTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 18251 | || | ||| ||||| || | ||||||||||| | |||||| | ||||| ||| Sbjct 108879 CGGATTAATGATGAAGTTACTAATGAACCGTGCATAGCTGAGAATAATGAACCACCAAAT 108820 Query 18252 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAAT 18311 || || |||||||| | ||| ||||| || ||||| | || ||||| || ||||||||| Sbjct 108819 ACACCAGCAACACCTAACATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGAAT 108760 Query 18312 ACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCT 18371 |||| |||||| ||||||||||| ||||| | ||||||||||||||||||| ||| Sbjct 108759 ACGATCATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCT 108700 Query 18372 TGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 ||||| | || || | | ||||||| ||||| |||||||| || || |||||| Sbjct 108699 TGTCCGATTGGGTAGATTAAGAATACTGCAGTTGCAGCAGCTACTGGAGCTGAGTAAGCA 108640 Query 18432 ACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 ||||| ||||| || |||||||||| | ||| ||||||||| | || ||||||||| Sbjct 108639 ACACAGATCCAAGGACGCATACCTAAACGGTAAGAAAGTTCCCACTCACGACCCATGTAA 108580 Query 18492 GCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAAC 18551 | ||| | || | | |||||| | || || | ||| || || || ||||| |||||| Sbjct 108579 GATGCAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAAC 108520 Query 18552 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 18611 |||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 108519 CACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 108460 Query 18612 GACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGC 18671 | |||| || || || || ||||||||||| || || | ||| | || || || ||| Sbjct 108459 GTAGGGATAATAGCACCAGAGATGATGTTGTTACCGTATAATAAAGAACCAGAAACTGGC 108400 Query 18672 TCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGC---AATCAAAAATGCT 18728 ||||| |||||||| || || || |||||||| || | || | ||| || | | | Sbjct 108399 TCACGGATACCATCGATATCTACTGGAGGAGCTGCGATGAAGCCGATAATGAATACAGAT 108340 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 |||||| ||||| | ||||||||| | || || ||||| || | ||| | ||| Sbjct 108339 GTAGCT---GTTAATAAGCAAGGGATCATTAACACACCGAACCAACCGATGTATAAACGG 108283 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 || | || || | ||| ||||| |||| Sbjct 108282 TTTTCAGTTGAAGTGATCCACTCACAAAAAC 108252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151306324791680